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Pcp4l1 Gene Detail
Summary
  • Symbol
    Pcp4l1
  • Name
    Purkinje cell protein 4-like 1
  • Synonyms
    1500036F01Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913675
    NCBI Gene: 66425
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:171000833-171023837 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 79.11 cM, cytoband H2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    651 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913675
 protein coding gene Chr1:171000831-171023837 (-)
129S1/SvImJ MGP_129S1SvImJ_G0016744
 protein coding gene Chr1:176950687-176977260 (-)
A/J MGP_AJ_G0016724
 protein coding gene Chr1:169755077-169778102 (-)
AKR/J MGP_AKRJ_G0016690
 protein coding gene Chr1:174834268-174857261 (-)
BALB/cJ MGP_BALBcJ_G0016685
 protein coding gene Chr1:170236815-170259753 (-)
C3H/HeJ MGP_C3HHeJ_G0016508
 protein coding gene Chr1:175084974-175107944 (-)
C57BL/6NJ MGP_C57BL6NJ_G0017146
 protein coding gene Chr1:182833508-182857637 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014854
 protein coding gene Chr1:161433185-161456826 (-)
CAST/EiJ MGP_CASTEiJ_G0016089
 protein coding gene Chr1:174707514-174731257 (-)
CBA/J MGP_CBAJ_G0016483
 protein coding gene Chr1:189344650-189369797 (-)
DBA/2J MGP_DBA2J_G0016590
 protein coding gene Chr1:168593746-168616525 (-)
FVB/NJ MGP_FVBNJ_G0016586
 protein coding gene Chr1:166942974-166965884 (-)
LP/J MGP_LPJ_G0016661
 protein coding gene Chr1:178074588-178098570 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0016613
 protein coding gene Chr1:196634786-196658650 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0017183
 protein coding gene Chr1:174708747-174734010 (-)
PWK/PhJ MGP_PWKPhJ_G0015875
 protein coding gene Chr1:167815288-167839193 (-)
SPRET/EiJ MGP_SPRETEiJ_G0015659
 protein coding gene Chr1:173499696-173519163 (-)
WSB/EiJ MGP_WSBEiJ_G0016151
 protein coding gene Chr1:174826296-174851311 (-)



Homology
more
  • Human Ortholog
    PCP4L1, Purkinje cell protein 4 like 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PCP4L1, Purkinje cell protein 4 like 1
  • Synonyms
    IQM1
  • Links
    NCBI Gene ID: 654790
    neXtProt AC: NX_A6NKN8
    UniProt: A6NKN8

  • Chr Location
    1q23.3; chr1:161258745-161285450 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    891
  • Tissues
    100
  • cDNA Data
    41
  • Literature Summary
    9
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 66425 NCBI Gene Model | MGI Sequence Detail 23005 C57BL/6J ±  kb
transcript NM_025557 RefSeq | MGI Sequence Detail 1575 C57BL/6  
polypeptide Q6W8Q3 UniProt | EBI | MGI Sequence Detail 68 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 48
    cDNA 41
    Primer pair 4
    Other 3

    Microarray probesets 2
References
more
  • Summaries
    All 41
    Developmental Gene Expression 9
    Phenotypes 11
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory