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Cd99 Gene Detail
Summary
  • Symbol
    Cd99
  • Name
    CD99 antigen
  • Synonyms
    1110061M03Rik, 2410026K10Rik, D4, pilr-1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913728
    NCBI Gene: 673094
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Genome coordinates not available from the current reference assembly.
  • This gene is annotated to Unlocalized Scaffold from chromosome 4, MMCHR4UN_CTG6 (JH584295.1, NT_187055.1) of Assembly GRCm39. UCSC coordinates are chr4_JH584295_random:48-1475 bp, - strand.
  • Genetic Map
    Chromosome 4, cytoband C7-D1
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    CD99, CD99 molecule (Xg blood group)
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CD99, CD99 molecule (Xg blood group)
  • Synonyms
    HBA71, MIC2, MIC2X, MIC2Y, MSK5X
  • Links
    NCBI Gene ID: 4267
    neXtProt AC: NX_P14209
    UniProt: P14209

  • Chr Location
    XY;Y
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 2 genetic backgrounds
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a gene trap allele exhibit phenotypically normal thymus and spleen cells.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    12
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    21
  • Tissues
    18
  • cDNA Data
    46
  • Literature Summary
    2
Sequences &
Gene Models
less
  • All Sequences
    19
  • RefSeq
    3
  • UniProt
    4
Representative SequencesLengthStrain/SpeciesFlank
genomic AY262359 GenBank | ENA | DDBJ | MGI Sequence Detail 4543 129S4/SvJae ±  kb
transcript NM_025584 RefSeq | MGI Sequence Detail 950 Not Specified  
polypeptide Q8VCN6 UniProt | EBI | MGI Sequence Detail 175 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • InterPro Domains
    IPR022078 CD99 antigen-like protein 2
Molecular
Reagents
less
  • All nucleic 47
    Genomic 1
    cDNA 46

    Microarray probesets 4
Other
Accession IDs
less
MGI:1916074
References
more
  • Summaries
    All 27
    Developmental Gene Expression 2
    Gene Ontology 4
    Phenotypes 7
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
  • Latest
    J:286045 Li YT, et al., Blood flow guides sequential support of neutrophil arrest and diapedesis by PILR-beta1 and PILR-alpha. Elife. 2019 Aug 6;8:e47642
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory