Ube2d-ps Pseudogene Detail

Summary

• Symbol
  Ube2d-ps
• Name
  ubiquitin-conjugating enzyme E2D, pseudogene
• Synonyms
  1600028I17Rik, 2210015D19Rik

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:1913774
  NCBI Gene: 76508
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:5712150-5734710 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 3.87 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  799 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1913774	pseudogene	Chr11:5712093-5734990 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039791	pseudogene	Chr11:2840815-2866424 (+)
A/J	MGP_AJ_G0039788	pseudogene	Chr11:2730551-2752971 (+)
AKR/J	MGP_AKRJ_G0039717	pseudogene	Chr11:2870999-2893346 (+)
BALB/cJ	MGP_BALBcJ_G0039763	pseudogene	Chr11:2721451-2745000 (+)
C3H/HeJ	MGP_C3HHeJ_G0039419	pseudogene	Chr11:2747255-2771569 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040326	pseudogene	Chr11:2918497-2945407 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036947	pseudogene	Chr11:2613288-2638086 (+)
CAST/EiJ	MGP_CASTEiJ_G0038535	pseudogene	Chr11:2706549-2735804 (+)
CBA/J	MGP_CBAJ_G0039391	pseudogene	Chr11:3264370-3293000 (+)
DBA/2J	MGP_DBA2J_G0039589	pseudogene	Chr11:2635193-2659944 (+)
FVB/NJ	MGP_FVBNJ_G0039546	pseudogene	Chr11:2665938-2688575 (+)
LP/J	MGP_LPJ_G0039626	pseudogene	Chr11:2923012-2946889 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039547	pseudogene	Chr11:2886260-2910117 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040431	pseudogene	Chr11:2876380-2899691 (+)
PWK/PhJ	MGP_PWKPhJ_G0038214	pseudogene	Chr11:2659854-2683241 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037957	pseudogene	Chr11:2838177-2866462 (+)
WSB/EiJ	MGP_WSBEiJ_G0038769	pseudogene	Chr11:2718768-2744453 (+)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  13
• Gene trapped
  13
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  8

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  73
• RefSeq
  1

• Ensembl
  ENSMUSG00000083844 (Evidence), ENSMUSG00000121496 (Evidence)
• NCBI Gene
  76508

Representative Sequences			Length	Strain/Species
genomic	76508	NCBI Gene Model | MGI Sequence Detail	22561	C57BL/6J
transcript	NR_015577	RefSeq | MGI Sequence Detail	1840	C57BL/6

Molecular
Reagents

• All nucleic 9

  Genomic 1

  cDNA 8

  
  

  Microarray probesets 4

Other
Accession IDs

MGI:1923758, MGI:2144236

References

• Summaries
  All 19

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Ube2d-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100196	Chr11:5712121-5712182 (+)	2 bp