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Tceanc2 Gene Detail
Summary
  • Symbol
    Tceanc2
  • Name
    transcription elongation factor A (SII) N-terminal and central domain containing 2
  • Synonyms
    2210010B22Rik, 2210012G02Rik, 6330404A07Rik, Tdeanc2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913776
    NCBI Gene: 66526
  • Alliance
    gene page
  • Transcription Start Sites
    12 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:106991352-107035563 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 50.07 cM, cytoband C7
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1121 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913776
 protein coding gene Chr4:106991352-107036313 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028532
 protein coding gene Chr4:107805224-107853201 (-)
A/J MGP_AJ_G0028495
 protein coding gene Chr4:103942542-103987866 (-)
AKR/J MGP_AKRJ_G0028442
 protein coding gene Chr4:106485573-106532527 (-)
BALB/cJ MGP_BALBcJ_G0028514
 protein coding gene Chr4:104133465-104179713 (-)
C3H/HeJ MGP_C3HHeJ_G0028228
 protein coding gene Chr4:107234056-107281118 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028954
 protein coding gene Chr4:111684333-111729274 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026245
 protein coding gene Chr4:99222375-99266305 (-)
CAST/EiJ MGP_CASTEiJ_G0027664
 protein coding gene Chr4:105047085-105095169 (-)
CBA/J MGP_CBAJ_G0028197
 protein coding gene Chr4:115300056-115354103 (-)
DBA/2J MGP_DBA2J_G0028345
 protein coding gene Chr4:103559362-103608816 (-)
FVB/NJ MGP_FVBNJ_G0028313
 protein coding gene Chr4:102432029-102477164 (-)
LP/J MGP_LPJ_G0028446
 protein coding gene Chr4:108004527-108051928 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0028339
 protein coding gene Chr4:120599552-120647199 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028990
 protein coding gene Chr4:106722612-106776395 (-)
PWK/PhJ MGP_PWKPhJ_G0027390
 protein coding gene Chr4:101806283-101852983 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027214
 protein coding gene Chr4:104122434-104169485 (-)
WSB/EiJ MGP_WSBEiJ_G0027745
 protein coding gene Chr4:106905789-106951860 (-)



Homology
more
  • Human Ortholog
    TCEANC2, transcription elongation factor A N-terminal and central domain containing 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TCEANC2, transcription elongation factor A N-terminal and central domain containing 2
  • Synonyms
    C1orf83
  • Links
    NCBI Gene ID: 127428
    neXtProt AC: NX_Q96MN5
    UniProt: Q96MN5

  • Chr Location
    1p32.3; chr1:54053584-54112520 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    14 phenotype references
  • All Mutations and Alleles
    16
  • Chemically induced (other)
    2
  • Gene trapped
    10
  • Radiation induced
    1
  • Targeted
    3
  • Genomic Mutations
    4 involving Tceanc2
  • Find Mice (IMSR)
    23 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    3
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    749
  • Tissues
    29
  • cDNA Data
    17
  • Literature Summary
    1
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 66526 NCBI Gene Model | MGI Sequence Detail 44212 C57BL/6J ±  kb
transcript NM_025617 RefSeq | MGI Sequence Detail 6243 Not Specified  
polypeptide Q8R2M0 UniProt | EBI | MGI Sequence Detail 207 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • Protein Ontology
    PR:000030203 transcription elongation factor A N-terminal and central domain-containing protein 2
    (term hierarchy)
  • InterPro Domains
    IPR035441 TFIIS/LEDGF domain superfamily
    IPR003618 Transcription elongation factor S-II, central domain
    IPR036575 Transcription elongation factor S-II, central domain superfamily
    IPR003617 Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
    IPR017923 Transcription factor IIS, N-terminal
Molecular
Reagents
less
  • All nucleic 17
    cDNA 17

    Microarray probesets 6
Other
Accession IDs
less
MGI:1918004, MGI:1919549, MGI:2140429
References
more
  • Summaries
    All 39
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 14
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:201630 Ryder E, et al., Molecular characterization of mutant mouse strains generated from the EUCOMM/KOMP-CSD ES cell resource. Mamm Genome. 2013 Aug;24(7-8):286-94
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory