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Gdpd1 Gene Detail
Summary
  • Symbol
    Gdpd1
  • Name
    glycerophosphodiester phosphodiesterase domain containing 1
  • Synonyms
    2610020H15Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913819
    NCBI Gene: 66569
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:86924693-86964888 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 51.87 cM, cytoband C
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    133 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913819
 protein coding gene Chr11:86924620-86964963 (-)
129S1/SvImJ MGP_129S1SvImJ_G0018897
 protein coding gene Chr11:88607266-88650038 (-)
A/J MGP_AJ_G0018864
 protein coding gene Chr11:85202163-85244206 (-)
AKR/J MGP_AKRJ_G0018834
 protein coding gene Chr11:87748811-87789528 (-)
BALB/cJ MGP_BALBcJ_G0018837
 protein coding gene Chr11:85589433-85629519 (-)
C3H/HeJ MGP_C3HHeJ_G0018651
 protein coding gene Chr11:87771508-87813010 (-)
C57BL/6NJ MGP_C57BL6NJ_G0019289
 protein coding gene Chr11:91281785-91324177 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0016922
 protein coding gene Chr11:82231085-82271518 (-)
CAST/EiJ MGP_CASTEiJ_G0018206
 protein coding gene Chr11:88482650-88522944 (-)
CBA/J MGP_CBAJ_G0018622
 protein coding gene Chr11:95113681-95159964 (-)
DBA/2J MGP_DBA2J_G0018730
 protein coding gene Chr11:84764399-84804705 (-)
FVB/NJ MGP_FVBNJ_G0018719
 protein coding gene Chr11:84270858-84310911 (-)
LP/J MGP_LPJ_G0018800
 protein coding gene Chr11:89096083-89141738 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0018746
 protein coding gene Chr11:95211650-95252640 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0019329
 protein coding gene Chr11:87991382-88033354 (-)
PWK/PhJ MGP_PWKPhJ_G0017976
 protein coding gene Chr11:85575669-85617073 (-)
SPRET/EiJ MGP_SPRETEiJ_G0017768
 protein coding gene Chr11:87549250-87595865 (-)
WSB/EiJ MGP_WSBEiJ_G0018257
 protein coding gene Chr11:87870037-87910667 (-)



Homology
more
  • Human Ortholog
    GDPD1, glycerophosphodiester phosphodiesterase domain containing 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    GDPD1, glycerophosphodiester phosphodiesterase domain containing 1
  • Synonyms
    GDE4
  • Links
    NCBI Gene ID: 284161
    neXtProt AC: NX_Q8N9F7
    UniProt: Q8N9F7

  • Chr Location
    17q22
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    13 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    20
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    870
  • Tissues
    32
  • cDNA Data
    14
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000061666 Ensembl Gene Model | MGI Sequence Detail 40196 C57BL/6J ±  kb
transcript ENSMUST00000020804 Ensembl | MGI Sequence Detail 2336 Not Applicable  
polypeptide ENSMUSP00000020804 Ensembl | MGI Sequence Detail 314 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000032682 lysophospholipase D GDPD1
    (term hierarchy)
  • EC
    3.1.4.-
  • InterPro Domains
    IPR030395 Glycerophosphodiester phosphodiesterase domain
    IPR052271 Glycerophosphoryl Diester Phosphodiesterase-Related
    IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily
  • GlyGen
    Q9CRY7 1 site, 1 N-linked glycan (1 site)
Molecular
Reagents
less
  • All nucleic 14
    cDNA 14

    Microarray probesets 5
References
more
  • Summaries
    All 41
    Developmental Gene Expression 2
    Gene Ontology 7
    Phenotypes 13
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory