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Pphln1-ps1 Pseudogene Detail
Summary
  • Symbol
    Pphln1-ps1
  • Name
    periphilin 1, pseudogene 1
  • Synonyms
    3110001I22Rik
Location &
Maps
more
  • Sequence Map
    Chr16:13489750-13496252 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, Syntenic
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    197 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913848
 pseudogene Chr16:13489750-13496252 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022533
 protein coding gene Chr16:10652166-10658642 (+)
A/J MGP_AJ_G0022495
 protein coding gene Chr16:10070314-10076790 (+)
AKR/J MGP_AKRJ_G0022471
 protein coding gene Chr16:10507338-10513814 (+)
BALB/cJ MGP_BALBcJ_G0022499
 protein coding gene Chr16:10234693-10241170 (+)
C3H/HeJ MGP_C3HHeJ_G0022266
 protein coding gene Chr16:10600566-10608232 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022948
 protein coding gene Chr16:10819398-10825874 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020468
 protein coding gene Chr16:10164677-10171251 (+)
CAST/EiJ MGP_CASTEiJ_G0021793
 protein coding gene Chr16:10606195-10612668 (+)
CBA/J MGP_CBAJ_G0022235
 protein coding gene Chr16:11307645-11314340 (+)
DBA/2J MGP_DBA2J_G0022366
 protein coding gene Chr16:10068298-10075550 (+)
FVB/NJ MGP_FVBNJ_G0022342
 protein coding gene Chr16:10052235-10058711 (+)
LP/J MGP_LPJ_G0022434
 protein coding gene Chr16:10567866-10574342 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022364
 protein coding gene Chr16:10963829-10970305 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022961
 protein coding gene Chr16:10484647-10491123 (+)
PWK/PhJ MGP_PWKPhJ_G0021535
 protein coding gene Chr16:10326237-10332714 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021363
 protein coding gene Chr16:10466952-10476321 (+)
WSB/EiJ MGP_WSBEiJ_G0021841
 protein coding gene Chr16:10495373-10501859 (+)



Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

Cellular Component
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    26
  • Tissues
    4
  • cDNA Data
    8
  • Literature Summary
    1
Sequences &
Gene Models
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  • All Sequences
    29
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 66598 NCBI Gene Model | MGI Sequence Detail 6503 C57BL/6J ±  kb
transcript NR_175936 RefSeq | MGI Sequence Detail 1748 ZRU/MplStud  
polypeptide Q9CZ70 UniProt | EBI | MGI Sequence Detail 312 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR028851 Periphilin-1
Molecular
Reagents
less
  • All nucleic 9
    cDNA 8
    Primer pair 1
Other
Accession IDs
less
MGI:7281086
References
more
  • Summaries
    All 18
    Developmental Gene Expression 1
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:307963 Mrowiec K, et al., The periphilin 1-like BFAR isoform 3 is highly expressed in transcriptionally silent oocytes and involved in RNA metabolism. Biochim Biophys Acta Mol Cell Res. 2021 Sep;1868(10):119086
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory