1700017N19Rik MGI Mouse Gene Detail - MGI:1913855

Symbol

1700017N19Rik
Name

RIKEN cDNA 1700017N19 gene

Feature Type

protein coding gene
IDs

MGI:1913855
NCBI Gene: 66605
Alliance

gene page
Transcription Start Sites

4 TSS

Sequence Map

Chr10:100426346-100454257 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 10, 51.51 cM
Mapping Data

1 experiment

SNPs within 2kb

931 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1913855	protein coding gene	Chr10:100426346-100454263 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0017693	protein coding gene	Chr10:102459092-102488170 (+)
A/J	MGP_AJ_G0017672	protein coding gene	Chr10:98740344-98768192 (+)
AKR/J	MGP_AKRJ_G0017634	protein coding gene	Chr10:101561324-101589429 (+)
BALB/cJ	MGP_BALBcJ_G0017636	protein coding gene	Chr10:99043022-99070841 (+)
C3H/HeJ	MGP_C3HHeJ_G0017461	protein coding gene	Chr10:101589728-101617363 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0018093	protein coding gene	Chr10:106039841-106067528 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0015772	protein coding gene	Chr10:94118407-94148360 (+)
CAST/EiJ	MGP_CASTEiJ_G0017022	protein coding gene	Chr10:101636842-101666532 (+)
CBA/J	MGP_CBAJ_G0017430	protein coding gene	Chr10:110101089-110128853 (+)
DBA/2J	MGP_DBA2J_G0017535	protein coding gene	Chr10:97822889-97850686 (+)
FVB/NJ	MGP_FVBNJ_G0017529	protein coding gene	Chr10:97020739-97049829 (+)
LP/J	MGP_LPJ_G0017609	protein coding gene	Chr10:103070790-103100464 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0017559	protein coding gene	Chr10:111406329-111436972 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0018131	protein coding gene	Chr10:101539948-101567678 (+)
PWK/PhJ	MGP_PWKPhJ_G0016804	protein coding gene	Chr10:97895125-97923735 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0016594	protein coding gene	Chr10:100311148-100340908 (+)
WSB/EiJ	MGP_WSBEiJ_G0017082	protein coding gene	Chr10:101520810-101550412 (+)

Human Ortholog

C12orf50, chromosome 12 open reading frame 50

Vertebrate Orthologs

2

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

C12orf50, chromosome 12 open reading frame 50
Links

HGNC:26665

NCBI Gene ID: 160419

neXtProt AC: NX_Q8NA57

UniProt: Q8NA57
Chr Location

12q21.32; chr12:87980035-88034037 (-) GRCh38

MGI Vertebrate Homology

1700017N19Rik stringent orthology
1 human;1 mouse;1 rat
HCOP

vertebrate homology predictions: C12orf50
Gene Tree

1700017N19Rik

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Phenotype Summary

1 phenotype from 1 allele in 1 genetic background
7 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

2
Chemically induced (other)

1
Endonuclease-mediated

1
Genomic Mutations

1 involving 1700017N19Rik
Incidental Mutations

Mutagenetix , APF , CvDC
Find Mice (IMSR)

29 strains or lines available

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All GO Annotations

1
GO References

1

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

6

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

63
RefSeq

10
UniProt

9
CCDS

CCDS36047.1

Ensembl

ENSMUSG00000056912 (Evidence)
NCBI Gene

66605

			Length	Strain/Species	Flank
genomic	66605	NCBI Gene Model \| MGI Sequence Detail	27912	C57BL/6J	± kb
transcript	NM_001429354	RefSeq \| MGI Sequence Detail	1812	C57BL/6
polypeptide	NP_001416283	RefSeq \| MGI Sequence Detail	415	C57BL/6

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UniProt

9 Sequences
InterPro Domains

IPR040943 Protein of unknown function DUF5571

IPR041686 Zinc-finger CCCH domain

IPR000571 Zinc finger, CCCH-type

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All nucleic 6

cDNA 6

Microarray probesets 3

Summaries

All 22

Gene Ontology 1

Phenotypes 7
Earliest

J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
Latest

J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700017N19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95569	Chr10:100424972-100424993 (+)	-1,363 bp
Tssr95570	Chr10:100426384-100426395 (+)	44 bp
Tssr95571	Chr10:100428227-100428244 (+)	1,890 bp
Tssr95572	Chr10:100428248-100428268 (+)	1,912 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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