4921507G05Rik Gene Detail

Summary

• Symbol
  4921507G05Rik
• Name
  RIKEN cDNA 4921507G05 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1913959
  NCBI Gene: 66709
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:110807463-110810238 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 60.83 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  181 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1913959	lncRNA gene	Chr12:110807451-110810238 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005414	lincRNA gene	Chr12:113178791-113181566 (+)
A/J	MGP_AJ_G0005397	lincRNA gene	Chr12:108831859-108834632 (+)
AKR/J	MGP_AKRJ_G0005377	lincRNA gene	Chr12:111966878-111969577 (+)
BALB/cJ	MGP_BALBcJ_G0005379	lincRNA gene	Chr12:109257807-109261049 (+)
C3H/HeJ	MGP_C3HHeJ_G0005327	lincRNA gene	Chr12:112422517-112425292 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005533	lincRNA gene	Chr12:116710749-116713507 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004918	lincRNA gene	Chr12:105284548-105287644 (+)
CAST/EiJ	MGP_CASTEiJ_G0005272	lincRNA gene	Chr12:107305297-107308510 (+)
CBA/J	MGP_CBAJ_G0005316	lincRNA gene	Chr12:121184131-121186906 (+)
DBA/2J	MGP_DBA2J_G0005333	lincRNA gene	Chr12:108320918-108323555 (+)
FVB/NJ	MGP_FVBNJ_G0005359	lincRNA gene	Chr12:107119362-107122137 (+)
LP/J	MGP_LPJ_G0005416	lincRNA gene	Chr12:113011989-113014764 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005341	lincRNA gene	Chr12:124312813-124315512 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005533	lincRNA gene	Chr12:111454375-111458391 (+)
PWK/PhJ	MGP_PWKPhJ_G0005221	lincRNA gene	Chr12:102950904-102953577 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005142	lincRNA gene	Chr12:105632844-105638238 (+)
WSB/EiJ	MGP_WSBEiJ_G0005322	lincRNA gene	Chr12:112389104-112392756 (+)

Homology

• Gene Tree
  4921507G05Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000097650 (Evidence)
• NCBI Gene
  66709

Representative Sequences			Length	Strain/Species
genomic	66709	NCBI Gene Model | MGI Sequence Detail	2776	C57BL/6J
transcript	NR_152102	RefSeq | MGI Sequence Detail	1653	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 4921507G05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr115236	Chr12:110807455-110807471 (+)	0 bp