About   Help   FAQ
Pex39 Gene Detail
Summary
  • Symbol
    Pex39
  • Name
    peroxisomal biogenesis factor 39
  • Synonyms
    2310039H08Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914351
    NCBI Gene: 67101
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:47083561-47084322 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 22.90 cM, cytoband C
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    164 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914351
 protein coding gene Chr17:47083561-47084333 (+)
129S1/SvImJ MGP_129S1SvImJ_G0023833
 protein coding gene Chr17:47870564-47871336 (+)
A/J MGP_AJ_G0023791
 protein coding gene Chr17:46707915-46708687 (+)
AKR/J MGP_AKRJ_G0023762
 protein coding gene Chr17:47052843-47053615 (+)
BALB/cJ MGP_BALBcJ_G0023795
 protein coding gene Chr17:46607776-46608548 (+)
C3H/HeJ MGP_C3HHeJ_G0023558
 protein coding gene Chr17:47803320-47804092 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024238
 protein coding gene Chr17:49914404-49915176 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021688
 protein coding gene Chr17:43484768-43485543 (+)
CAST/EiJ MGP_CASTEiJ_G0023040
 protein coding gene Chr17:47894974-47895746 (+)
CBA/J MGP_CBAJ_G0023535
 protein coding gene Chr17:51707046-51707818 (+)
DBA/2J MGP_DBA2J_G0023661
 protein coding gene Chr17:45474951-45475723 (+)
FVB/NJ MGP_FVBNJ_G0023628
 protein coding gene Chr17:45106116-45106888 (+)
LP/J MGP_LPJ_G0023742
 protein coding gene Chr17:48540014-48540786 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0023657
 protein coding gene Chr17:51247299-51248071 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024283
 protein coding gene Chr17:47416276-47417048 (+)
PWK/PhJ MGP_PWKPhJ_G0022784
 protein coding gene Chr17:44817151-44817923 (+)
SPRET/EiJ MGP_SPRETEiJ_G0022600
 protein coding gene Chr17:44297204-44297990 (+)
WSB/EiJ MGP_WSBEiJ_G0023105
 protein coding gene Chr17:47969400-47970172 (+)



Homology
more
  • Human Ortholog
    PEX39, peroxisomal biogenesis factor 39
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PEX39, peroxisomal biogenesis factor 39
  • Synonyms
    C6orf226
  • Links
    NCBI Gene ID: 441150
    neXtProt AC: NX_Q5I0X4
    UniProt: Q5I0X4

  • Chr Location
    6p21.1; chr6:42890265-42890821 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    5 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    707
  • Tissues
    1
  • cDNA Data
    34
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000062619 Ensembl Gene Model | MGI Sequence Detail 762 C57BL/6J ±  kb
transcript ENSMUST00000071430 Ensembl | MGI Sequence Detail 762 Not Applicable  
polypeptide ENSMUSP00000071378 Ensembl | MGI Sequence Detail 114 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR039995 Uncharacterized protein C6orf226-like
  • GlyGen
    Q9D727 2 sites, 1 O-linked glycan (2 sites)
Molecular
Reagents
less
  • All nucleic 34
    cDNA 34

    Microarray probesets 3
Other
Accession IDs
less
MGI:7718369
References
more
  • Summaries
    All 23
    Developmental Gene Expression 1
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory