Pdzk1ip1 MGI Mouse Gene Detail - MGI:1914432 - PDZK1 interacting protein 1

Symbol

Pdzk1ip1
Name

PDZK1 interacting protein 1
Synonyms

0610007F13Rik, 2700030M23Rik, Map17

Feature Type

protein coding gene
IDs

MGI:1914432
NCBI Gene: 67182
Alliance

gene page
Transcription Start Sites

12 TSS

Sequence Map

Chr4:114945905-114951091 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 4, 52.75 cM
Mapping Data

3 experiments

SNPs within 2kb

210 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914432	protein coding gene	Chr4:114945905-114951096 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0028595	protein coding gene	Chr4:115857583-115862776 (+)
A/J	MGP_AJ_G0028557	protein coding gene	Chr4:111449707-111454897 (+)
AKR/J	MGP_AKRJ_G0028505	protein coding gene	Chr4:113744414-113749598 (+)
BALB/cJ	MGP_BALBcJ_G0028577	protein coding gene	Chr4:112076340-112081532 (+)
C3H/HeJ	MGP_C3HHeJ_G0028291	protein coding gene	Chr4:115362739-115367928 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0029021	protein coding gene	Chr4:120339813-120344997 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0026305	protein coding gene	Chr4:105520159-105537705 (+)
CAST/EiJ	MGP_CASTEiJ_G0027728	protein coding gene	Chr4:112781297-112786511 (+)
CBA/J	MGP_CBAJ_G0028259	protein coding gene	Chr4:123460870-123466072 (+)
DBA/2J	MGP_DBA2J_G0028408	protein coding gene	Chr4:112079812-112085002 (+)
FVB/NJ	MGP_FVBNJ_G0028376	protein coding gene	Chr4:110552528-110557724 (+)
LP/J	MGP_LPJ_G0028509	protein coding gene	Chr4:116066112-116071301 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0028401	protein coding gene	Chr4:128597253-128602454 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0029057	protein coding gene	Chr4:114991833-114997022 (+)
PWK/PhJ	MGP_PWKPhJ_G0027453	protein coding gene	Chr4:108876639-108881828 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0027277	protein coding gene	Chr4:111390004-111395223 (+)
WSB/EiJ	MGP_WSBEiJ_G0027806	protein coding gene	Chr4:114773043-114778405 (+)

Human Ortholog

PDZK1IP1, PDZK1 interacting protein 1

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

PDZK1IP1, PDZK1 interacting protein 1
Synonyms

DD96, MAP17, SPAP
Links

HGNC:16887

NCBI Gene ID: 10158

neXtProt AC: NX_Q13113

UniProt: Q13113
Chr Location

1p33; chr1:47183582-47191044 (-) GRCh38

MGI Vertebrate Homology

Pdzk1ip1 stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: PDZK1IP1
Gene Tree

Pdzk1ip1

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Phenotype Summary

10 phenotype references

All Mutations and Alleles

9
Chemically induced (other)

2
Endonuclease-mediated

3
Radiation induced

1
Targeted

3
Genomic Mutations

4 involving Pdzk1ip1
Incidental Mutations

APF , CvDC
Find Mice (IMSR)

13 strains or lines available
Recombinase Activity

Comparison Matrix Gene Expression + Recombinase Activity

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All GO Annotations

1
GO References

1

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

753
Tissues

35
cDNA Data

72
Literature Summary

4

Images

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GENSAT

GEO

Expression Atlas
Other Vertebrate Links

Xenbase pdzk1ip1

ZFIN pdzk1ip1

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All Sequences

56
RefSeq

8
UniProt

3
CCDS

CCDS18487.1, CCDS51272.1

Ensembl

ENSMUSG00000028716 (Evidence)
NCBI Gene

67182

			Length	Strain/Species	Flank
genomic	67182	NCBI Gene Model \| MGI Sequence Detail	5187	C57BL/6J	± kb
transcript	NM_001164557	RefSeq \| MGI Sequence Detail	1129	C57BL/6
polypeptide	Q9CQH0	UniProt \| EBI \| MGI Sequence Detail	114	Not Applicable

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UniProt

3 Sequences
Protein Ontology

PR:000012529 PDZK1-interacting protein 1

(term hierarchy)
InterPro Domains

IPR031627 PDZK1-interacting protein 1/SMIM24

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All nucleic 75

cDNA 74

Other 1

Microarray probesets 4

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MGI:1918913, MGI:2140501

Summaries

All 38

Developmental Gene Expression 4

Gene Ontology 1

Phenotypes 10
Earliest

J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
Latest

J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;

TSS for Pdzk1ip1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38446	Chr4:114945931-114945966 (+)	44 bp
Tssr38447	Chr4:114945976-114945987 (+)	77 bp
Tssr38448	Chr4:114946060-114946069 (+)	160 bp
Tssr38449	Chr4:114946102-114946106 (+)	199 bp
Tssr38450	Chr4:114946111-114946122 (+)	212 bp
Tssr38451	Chr4:114946187-114946346 (+)	362 bp
Tssr38452	Chr4:114946352-114946356 (+)	449 bp
Tssr38453	Chr4:114947357-114947362 (+)	1,455 bp
Tssr38454	Chr4:114947365-114947366 (+)	1,461 bp
Tssr38455	Chr4:114947385-114947425 (+)	1,500 bp
Tssr1267	Chr4:114948193-114948203 (+)	2,293 bp
Tssr38456	Chr4:114950779-114950805 (+)	4,887 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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