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Spats2l Gene Detail
Summary
  • Symbol
    Spats2l
  • Name
    spermatogenesis associated, serine-rich 2-like
  • Synonyms
    2810022L02Rik, A230104H11Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914448
    NCBI Gene: 67198
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:57813321-57987553 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 28.85 cM, cytoband C2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    4542 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914448
 protein coding gene Chr1:57813261-57987557 (+)
129S1/SvImJ MGP_129S1SvImJ_G0016042
 protein coding gene Chr1:57602338-57779073 (+)
A/J MGP_AJ_G0016025
 protein coding gene Chr1:55596008-55768585 (+)
AKR/J MGP_AKRJ_G0015981
 protein coding gene Chr1:57090773-57272336 (+)
BALB/cJ MGP_BALBcJ_G0015980
 protein coding gene Chr1:55628152-55801646 (+)
C3H/HeJ MGP_C3HHeJ_G0015812
 protein coding gene Chr1:57368229-57544355 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016433
 protein coding gene Chr1:59969419-60146324 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014154
 protein coding gene Chr1:51533612-51713449 (+)
CAST/EiJ MGP_CASTEiJ_G0015394
 protein coding gene Chr1:56627236-56803972 (+)
CBA/J MGP_CBAJ_G0015784
 protein coding gene Chr1:61714728-61892258 (+)
DBA/2J MGP_DBA2J_G0015885
 protein coding gene Chr1:55003058-55176060 (+)
FVB/NJ MGP_FVBNJ_G0015887
 protein coding gene Chr1:54337668-54509909 (+)
LP/J MGP_LPJ_G0015957
 protein coding gene Chr1:58497918-58671136 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0015907
 protein coding gene Chr1:64734127-64909943 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016480
 protein coding gene Chr1:57077815-57253953 (+)
PWK/PhJ MGP_PWKPhJ_G0015180
 protein coding gene Chr1:54370350-54548863 (+)
SPRET/EiJ MGP_SPRETEiJ_G0014961
 protein coding gene Chr1:56654827-56832623 (+)
WSB/EiJ MGP_WSBEiJ_G0015457
 protein coding gene Chr1:56758629-56931552 (+)



Homology
more
  • Human Ortholog
    SPATS2L, spermatogenesis associated serine rich 2 like
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SPATS2L, spermatogenesis associated serine rich 2 like
  • Synonyms
    DNAPTP6, SGNP
  • Links
    NCBI Gene ID: 26010
    neXtProt AC: NX_Q9NUQ6
    UniProt: Q9NUQ6

  • Chr Location
    2q33.1; chr2:200305879-200482264 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    7
  • GO References
    3
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    842
  • Tissues
    37
  • cDNA Data
    51
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000038305 Ensembl Gene Model | MGI Sequence Detail 174233 C57BL/6J ±  kb
transcript ENSMUST00000167085 Ensembl | MGI Sequence Detail 3929 Not Applicable  
polypeptide ENSMUSP00000133054 Ensembl | MGI Sequence Detail 578 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 51
    cDNA 51

    Microarray probesets 7
Other
Accession IDs
less
MGI:1925009, MGI:2138144, MGI:2138274, MGI:2138335, MGI:2138588
References
more
  • Summaries
    All 38
    Developmental Gene Expression 2
    Gene Ontology 3
    Phenotypes 10
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory