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Rffl Gene Detail
Summary
  • Symbol
    Rffl
  • Name
    ring finger and FYVE like domain containing protein
  • Synonyms
    1700051E09Rik, 4930516L10Rik, Carp-2, Carp2, fring, rififylin
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914588
    NCBI Gene: 67338
  • Alliance
    gene page
  • Transcription Start Sites
    11 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:82694645-82762065 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 50.25 cM, cytoband B5
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1891 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914588
 protein coding gene Chr11:82693275-82762065 (-)
129S1/SvImJ MGP_129S1SvImJ_G0018831
 protein coding gene Chr11:84078546-84152718 (-)
A/J MGP_AJ_G0018798
 protein coding gene Chr11:80848847-80919923 (-)
AKR/J MGP_AKRJ_G0018768
 protein coding gene Chr11:83274571-83342831 (-)
BALB/cJ MGP_BALBcJ_G0018771
 protein coding gene Chr11:81250045-81320782 (-)
C3H/HeJ MGP_C3HHeJ_G0018585
 protein coding gene Chr11:83310769-83381398 (-)
C57BL/6NJ MGP_C57BL6NJ_G0019223
 protein coding gene Chr11:86602195-86672417 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0016857
 protein coding gene Chr11:77812922-77882525 (-)
CAST/EiJ MGP_CASTEiJ_G0018140
 protein coding gene Chr11:83894430-83967154 (-)
CBA/J MGP_CBAJ_G0018556
 protein coding gene Chr11:90343994-90423064 (-)
DBA/2J MGP_DBA2J_G0018664
 protein coding gene Chr11:80424959-80494188 (-)
FVB/NJ MGP_FVBNJ_G0018653
 protein coding gene Chr11:79950936-80018089 (-)
LP/J MGP_LPJ_G0018734
 protein coding gene Chr11:84597169-84665244 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0018680
 protein coding gene Chr11:90552648-90623824 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0019263
 protein coding gene Chr11:83533173-83607831 (-)
PWK/PhJ MGP_PWKPhJ_G0017910
 protein coding gene Chr11:81244895-81314547 (-)
SPRET/EiJ MGP_SPRETEiJ_G0017701
 protein coding gene Chr11:83151373-83228418 (-)
WSB/EiJ MGP_WSBEiJ_G0018192
 protein coding gene Chr11:83421831-83494678 (-)



Homology
more
  • Human Ortholog
    RFFL, ring finger and FYVE like domain containing E3 ubiquitin protein ligase
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RFFL, ring finger and FYVE like domain containing E3 ubiquitin protein ligase
  • Synonyms
    CARP-2, CARP2, FRING, RIFIFYLIN, RNF189, RNF34L
  • Links
    NCBI Gene ID: 117584
    neXtProt AC: NX_Q8WZ73
    UniProt: Q8WZ73

  • Chr Location
    17q12; chr17:35005990-35089319 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotypes from 2 alleles in 2 genetic backgrounds
    18 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for an inactivating targeted mutation of this gene are born at the expected Mendelian frequency; they are viable and fertile and exhibit no apparent abnormal phenotype.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    38
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    793
  • Tissues
    63
  • cDNA Data
    15
  • Literature Summary
    4
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 67338 NCBI Gene Model | MGI Sequence Detail 67421 C57BL/6J ±  kb
    transcript NM_001164569 RefSeq | MGI Sequence Detail 3650 C57BL/6  
    polypeptide Q6ZQM0 UniProt | EBI | MGI Sequence Detail 377 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 18
      cDNA 17
      Primer pair 1

      Microarray probesets 7
    Other
    Accession IDs
    less
    MGI:1922384, MGI:2671013
    References
    more
    • Summaries
      All 52
      Developmental Gene Expression 4
      Gene Ontology 7
      Phenotypes 18
    • Earliest
      J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    11/12/2024
    MGI 6.24     		The Jackson Laboratory