Ppp1r2-ps9 Pseudogene Detail

Summary

• Symbol
  Ppp1r2-ps9
• Name
  protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 9
• Synonyms
  4930403L05Rik

• Feature Type
  pseudogene
• IDs
  MGI:1914645
  NCBI Gene: 67395
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:14977071-14977619 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 10.15 cM, cytoband A1.3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  92 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914645	pseudogene	ChrX:14976825-14977728 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0039762	pseudogene	ChrX:10003991-10004872 (-)
A/J	MGP_AJ_G0039761	pseudogene	ChrX:10080350-10081231 (-)
AKR/J	MGP_AKRJ_G0039686	pseudogene	ChrX:10400948-10401829 (-)
BALB/cJ	MGP_BALBcJ_G0039730	pseudogene	ChrX:9905924-9906805 (-)
C3H/HeJ	MGP_C3HHeJ_G0039389	pseudogene	ChrX:10144116-10144997 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040291	pseudogene	ChrX:10216363-10217244 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036918	pseudogene	ChrX:8779676-8780557 (-)
CAST/EiJ	MGP_CASTEiJ_G0038509	pseudogene	ChrX:9751629-9752510 (-)
CBA/J	MGP_CBAJ_G0039362	pseudogene	ChrX:10698402-10699283 (-)
DBA/2J	MGP_DBA2J_G0039558	pseudogene	ChrX:9905491-9906372 (-)
FVB/NJ	MGP_FVBNJ_G0039516	pseudogene	ChrX:9744301-9745182 (-)
LP/J	MGP_LPJ_G0039597	pseudogene	ChrX:10236494-10237375 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039516	pseudogene	ChrX:10692407-10693288 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040398	pseudogene	ChrX:9893224-9894105 (-)
PWK/PhJ	MGP_PWKPhJ_G0038186	pseudogene	ChrX:9335782-9336663 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0037932	pseudogene	ChrX:9976872-9977753 (-)
WSB/EiJ	MGP_WSBEiJ_G0038744	pseudogene	ChrX:9892899-9893780 (-)

Homology

• Gene Tree
  Ppp1r2-ps9
  

Expression

• Assay Results
  706
• cDNA Data
  7

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1
• CCDS
  CCDS30031.1

• Ensembl
  ENSMUSG00000045217 (Evidence)
• NCBI Gene
  67395

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000045217	Ensembl Gene Model | MGI Sequence Detail	549	C57BL/6J
transcript	ENSMUST00000173100	Ensembl | MGI Sequence Detail	549	Not Applicable

Molecular
Reagents

• All nucleic 7

  cDNA 7

  
  

  Microarray probesets 1

References

• Summaries
  All 13
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Ppp1r2-ps9:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr163023	ChrX:14977695-14977710 (-)	-84 bp