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Spmip5 Gene Detail
Summary
  • Symbol
    Spmip5
  • Name
    sperm microtubule inner protein 5
  • Synonyms
    1700019N19Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914757
    NCBI Gene: 67507
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:58774233-58782846 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 19, 54.51 cM, cytoband D3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    272 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914757
 protein coding gene Chr19:58774233-58782893 (-)
129S1/SvImJ MGP_129S1SvImJ_G0025281
 protein coding gene Chr19:59274278-59282863 (-)
A/J MGP_AJ_G0025257
 protein coding gene Chr19:56375457-56384185 (-)
AKR/J MGP_AKRJ_G0025226
 protein coding gene Chr19:58134999-58145313 (-)
BALB/cJ MGP_BALBcJ_G0025252
 protein coding gene Chr19:56440413-56449102 (-)
C3H/HeJ MGP_C3HHeJ_G0025012
 protein coding gene Chr19:58387145-58395898 (-)
C57BL/6NJ MGP_C57BL6NJ_G0025695
 protein coding gene Chr19:60705956-60714606 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0023107
 protein coding gene Chr19:55248345-55257126 (-)
CAST/EiJ MGP_CASTEiJ_G0024477
 protein coding gene Chr19:58461812-58470377 (-)
CBA/J MGP_CBAJ_G0024992
 protein coding gene Chr19:63669303-63679684 (-)
DBA/2J MGP_DBA2J_G0025124
 protein coding gene Chr19:56118285-56127067 (-)
FVB/NJ MGP_FVBNJ_G0025085
 protein coding gene Chr19:55855391-55864303 (-)
LP/J MGP_LPJ_G0025210
 protein coding gene Chr19:59138874-59149880 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0025118
 protein coding gene Chr19:62911433-62920075 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0025753
 protein coding gene Chr19:58365435-58374070 (-)
PWK/PhJ MGP_PWKPhJ_G0024225
 protein coding gene Chr19:56123177-56132257 (-)
SPRET/EiJ MGP_SPRETEiJ_G0024028
 protein coding gene Chr19:57031834-57040918 (-)
WSB/EiJ MGP_WSBEiJ_G0024547
 protein coding gene Chr19:58486292-58495724 (-)



Homology
more
  • Human Ortholog
    SPMIP5, sperm microtubule inner protein 5
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SPMIP5, sperm microtubule inner protein 5
  • Synonyms
    C10orf82
  • Links
    NCBI Gene ID: 143379
    neXtProt AC: NX_Q8WW14
    UniProt: Q8WW14

  • Chr Location
    10q25.3; chr10:116662211-116670282 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    3 phenotype references
Male mice homozygous for a mutation are viable and show normal fertility.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    25
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 67507 NCBI Gene Model | MGI Sequence Detail 8614 C57BL/6J ±  kb
transcript NM_001368688 RefSeq | MGI Sequence Detail 1187 C57BL/6  
polypeptide Q9CQT6 UniProt | EBI | MGI Sequence Detail 229 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 25
    cDNA 25

    Microarray probesets 2
Other
Accession IDs
less
MGI:7470726
References
more
  • Summaries
    All 23
    Gene Ontology 2
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:338030 Zhou L, et al., Structures of sperm flagellar doublet microtubules expand the genetic spectrum of male infertility. Cell. 2023 Jun 22;186(13):2897-2910.e19
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory