4930483J18Rik Gene Detail

Summary

• Symbol
  4930483J18Rik
• Name
  RIKEN cDNA 4930483J18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1914888
  NCBI Gene: 67638
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:81075054-81076958 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 38.02 cM, cytoband E2
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914888	lncRNA gene	Chr15:81074975-81076964 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015306	unclassified non-coding RNA gene	Chr15:81594840-81596829 (+)
A/J	MGP_AJ_G0015281	unclassified non-coding RNA gene	Chr15:78736786-78738781 (+)
AKR/J	MGP_AKRJ_G0015244	unclassified non-coding RNA gene	Chr15:80931269-80933264 (+)
BALB/cJ	MGP_BALBcJ_G0015244	unclassified non-coding RNA gene	Chr15:78761254-78763249 (+)
C3H/HeJ	MGP_C3HHeJ_G0015068	unclassified non-coding RNA gene	Chr15:80920481-80922473 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015698	unclassified non-coding RNA gene	Chr15:84781652-84783641 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013440	unclassified non-coding RNA gene	Chr15:75204304-75206261 (+)
CAST/EiJ	MGP_CASTEiJ_G0014619	unclassified non-coding RNA gene	Chr15:81671565-81673567 (+)
CBA/J	MGP_CBAJ_G0015047	unclassified non-coding RNA gene	Chr15:87452148-87454143 (+)
DBA/2J	MGP_DBA2J_G0015142	unclassified non-coding RNA gene	Chr15:78220956-78222934 (+)
FVB/NJ	MGP_FVBNJ_G0015149	unclassified non-coding RNA gene	Chr15:77258976-77260970 (+)
LP/J	MGP_LPJ_G0015221	unclassified non-coding RNA gene	Chr15:81755767-81757756 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015174	unclassified non-coding RNA gene	Chr15:92427285-92429280 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015737	unclassified non-coding RNA gene	Chr15:80985385-80987374 (+)
PWK/PhJ	MGP_PWKPhJ_G0014410	unclassified non-coding RNA gene	Chr15:78243057-78245108 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014197	unclassified non-coding RNA gene	Chr15:80781462-80783429 (+)
WSB/EiJ	MGP_WSBEiJ_G0014726	unclassified non-coding RNA gene	Chr15:81395048-81397027 (+)

Homology

• Gene Tree
  4930483J18Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  17 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 4930483J18Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000047938 (Evidence)
• NCBI Gene
  67638

Representative Sequences			Length	Strain/Species
genomic	67638	NCBI Gene Model | MGI Sequence Detail	1905	C57BL/6J
transcript	NR_015603	RefSeq | MGI Sequence Detail	1094	C57BL/6
polypeptide	Q9D5A4	UniProt | EBI | MGI Sequence Detail	116	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 28

  Phenotypes 17
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

TSS for 4930483J18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr132260	Chr15:81074697-81074706 (+)	-352 bp