4930542C12Rik Gene Detail

Summary

• Symbol
  4930542C12Rik
• Name
  RIKEN cDNA 4930542C12 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1914898
  NCBI Gene: 67648
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:78302238-78303440 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 43.65 cM, cytoband E1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914898	lncRNA gene	Chr9:78302238-78303440 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004650	antisense lncRNA gene	Chr9:78899617-78900816 (-)
A/J	MGP_AJ_G0004631	antisense lncRNA gene	Chr9:76175612-76176815 (-)
AKR/J	MGP_AKRJ_G0004614	antisense lncRNA gene	Chr9:77978562-77979765 (-)
BALB/cJ	MGP_BALBcJ_G0004615	antisense lncRNA gene	Chr9:75832023-75833226 (-)
C3H/HeJ	MGP_C3HHeJ_G0004564	antisense lncRNA gene	Chr9:78496325-78497528 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004765	antisense lncRNA gene	Chr9:81021151-81022353 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004215	antisense lncRNA gene	Chr9:75407404-75408603 (-)
CAST/EiJ	MGP_CASTEiJ_G0004520	antisense lncRNA gene	Chr9:78772786-78773982 (-)
CBA/J	MGP_CBAJ_G0004558	antisense lncRNA gene	Chr9:83884064-83885264 (-)
DBA/2J	MGP_DBA2J_G0004573	antisense lncRNA gene	Chr9:75816525-75817728 (-)
FVB/NJ	MGP_FVBNJ_G0004591	antisense lncRNA gene	Chr9:75046907-75048107 (-)
LP/J	MGP_LPJ_G0004654	antisense lncRNA gene	Chr9:79123958-79125157 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004579	antisense lncRNA gene	Chr9:85063400-85064603 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004764	antisense lncRNA gene	Chr9:78141986-78143189 (-)
PWK/PhJ	MGP_PWKPhJ_G0004474	antisense lncRNA gene	Chr9:76006119-76007317 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004414	antisense lncRNA gene	Chr9:78340558-78341756 (-)
WSB/EiJ	MGP_WSBEiJ_G0004563	antisense lncRNA gene	Chr9:78091045-78092244 (-)

Homology

• Gene Tree
  4930542C12Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 4930542C12Rik
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• UniProt
  3

• Ensembl
  ENSMUSG00000090724 (Evidence)
• NCBI Gene
  67648

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090724	Ensembl Gene Model | MGI Sequence Detail	1203	C57BL/6J
transcript	ENSMUST00000171096	Ensembl | MGI Sequence Detail	1203	Not Applicable
polypeptide	Q9D4X9	UniProt | EBI | MGI Sequence Detail	193	Not Applicable

Protein
Information

• UniProt
  3 Sequences

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 17

  Phenotypes 7
• Earliest
  J:12013 Russell LB, Definition of functional units in a small chromosomal segment of the mouse and its use in interpreting the nature of radiation-induced mutations. Mutat Res. 1971 Jan;11(1):107-23
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930542C12Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr90639	Chr9:78303378-78303398 (-)	52 bp