0610040B10Rik MGI Mouse Gene Detail - MGI:1914922

Sequence Map

Chr5:143315063-143318459 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914922	lncRNA gene	Chr5:143315002-143318459 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004215	antisense lncRNA gene	Chr5:148654882-148658339 (+)
A/J	MGP_AJ_G0004193	antisense lncRNA gene	Chr5:142274496-142277953 (+)
AKR/J	MGP_AKRJ_G0004174	antisense lncRNA gene	Chr5:146733838-146737295 (+)
BALB/cJ	MGP_BALBcJ_G0004180	antisense lncRNA gene	Chr5:143525855-143529312 (+)
C3H/HeJ	MGP_C3HHeJ_G0004128	antisense lncRNA gene	Chr5:147545731-147549188 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004329	antisense lncRNA gene	Chr5:154082431-154085888 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003803	antisense lncRNA gene	Chr5:136055049-136058447 (+)
CAST/EiJ	MGP_CASTEiJ_G0004090	antisense lncRNA gene	Chr5:147043024-147046488 (+)
CBA/J	MGP_CBAJ_G0004122	antisense lncRNA gene	Chr5:160433281-160436738 (+)
DBA/2J	MGP_DBA2J_G0004138	antisense lncRNA gene	Chr5:142041263-142044720 (+)
FVB/NJ	MGP_FVBNJ_G0004154	antisense lncRNA gene	Chr5:141252268-141255725 (+)
LP/J	MGP_LPJ_G0004216	antisense lncRNA gene	Chr5:149256834-149260291 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004144	antisense lncRNA gene	Chr5:162834397-162837854 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004326	antisense lncRNA gene	Chr5:146579245-146582702 (+)
PWK/PhJ	MGP_PWKPhJ_G0004043	antisense lncRNA gene	Chr5:141127393-141131040 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003987	antisense lncRNA gene	Chr5:144317615-144322857 (+)
WSB/EiJ	MGP_WSBEiJ_G0004126	antisense lncRNA gene	Chr5:147370393-147373850 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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			Length	Strain/Species	Flank
genomic	67672	NCBI Gene Model \| MGI Sequence Detail	3397	C57BL/6J	± kb
transcript	NR_027874	RefSeq \| MGI Sequence Detail	443	C57BL/6
polypeptide	Q3UN32	UniProt \| EBI \| MGI Sequence Detail	50	Not Applicable

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Summaries

All 20

Phenotypes 4
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 0610040B10Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49643	Chr5:143315048-143315077 (+)	0 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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