1110002E22Rik MGI Mouse Gene Detail - MGI:1915066

Symbol

1110002E22Rik
Name

RIKEN cDNA 1110002E22 gene

Feature Type

protein coding gene
IDs

MGI:1915066
NCBI Gene: 102634333
Alliance

gene page
Transcription Start Sites

5 TSS

Sequence Map

Chr3:137770813-137787267 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 3, 64.05 cM
Mapping Data

3 experiments

SNPs within 2kb

468 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1915066	protein coding gene	Chr3:137768010-137787267 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0027923	protein coding gene	Chr3:141108889-141125324 (+)
A/J	MGP_AJ_G0027880	protein coding gene	Chr3:136112385-136128889 (+)
AKR/J	MGP_AKRJ_G0027846	protein coding gene	Chr3:139737446-139753921 (+)
BALB/cJ	MGP_BALBcJ_G0027892	protein coding gene	Chr3:135923237-135939725 (+)
C3H/HeJ	MGP_C3HHeJ_G0027622	protein coding gene	Chr3:140061721-140078212 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0028336	protein coding gene	Chr3:145968034-145984488 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0025674	protein coding gene	Chr3:131217473-131233674 (+)
CAST/EiJ	MGP_CASTEiJ_G0027078	protein coding gene	Chr3:139831530-139847945 (+)
CBA/J	MGP_CBAJ_G0027599	protein coding gene	Chr3:150931470-150947979 (+)
DBA/2J	MGP_DBA2J_G0027738	protein coding gene	Chr3:135236915-135253358 (+)
FVB/NJ	MGP_FVBNJ_G0027705	protein coding gene	Chr3:132698669-132715108 (+)
LP/J	MGP_LPJ_G0027848	protein coding gene	Chr3:142507624-142524067 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0027737	protein coding gene	Chr3:159035735-159052166 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0028394	protein coding gene	Chr3:139275292-139291727 (+)
PWK/PhJ	MGP_PWKPhJ_G0026802	protein coding gene	Chr3:134989022-135005400 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0026629	protein coding gene	Chr3:137365059-137381524 (+)
WSB/EiJ	MGP_WSBEiJ_G0027157	protein coding gene	Chr3:140104873-140121330 (+)

Human Ortholog

C4orf54, chromosome 4 open reading frame 54

Vertebrate Orthologs

2

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

C4orf54, chromosome 4 open reading frame 54
Synonyms

FOPV
Links

HGNC:27741

NCBI Gene ID: 285556

neXtProt AC: NX_D6RIA3

UniProt: D6RIA3
Chr Location

4q23; chr4:99636529-99657828 (-) GRCh38

MGI Vertebrate Homology

1110002E22Rik stringent orthology
1 human;1 mouse;1 zebrafish
HCOP

vertebrate homology predictions: C4orf54
Gene Tree

1110002E22Rik

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References

1 with disease annotations

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Phenotype Summary

4 phenotype references

All Mutations and Alleles

2
Chemically induced (other)

1
Radiation induced

1
Genomic Mutations

2 involving 1110002E22Rik
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

87 strains or lines available

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

719
Tissues

10
cDNA Data

4
Literature Summary

2

Images

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

33
RefSeq

4
UniProt

1
CCDS

CCDS89691.1

Ensembl

ENSMUSG00000090066 (Evidence)
NCBI Gene

102634333

			Length	Strain/Species	Flank
genomic	ENSMUSG00000090066	Ensembl Gene Model \| MGI Sequence Detail	16455	C57BL/6J	± kb
transcript	ENSMUST00000163080	Ensembl \| MGI Sequence Detail	9741	Not Applicable
polypeptide	ENSMUSP00000123851	Ensembl \| MGI Sequence Detail	1786	Not Applicable

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UniProt

1 Sequence
Protein Ontology

PR:000059733 uncharacterized protein C4orf54

(term hierarchy)
InterPro Domains

IPR052303 Cardiac-enriched FHL2-interacting

IPR027838 Domain of unknown function DUF4585

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All nucleic 4

cDNA 4

Microarray probesets 3

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MGI:2139698, MGI:3780463

Summaries

All 23

Developmental Gene Expression 2

Diseases 1

Phenotypes 4
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for 1110002E22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31937	Chr3:137770818-137770839 (+)	16 bp
Tssr31938	Chr3:137770904-137770917 (+)	98 bp
Tssr31939	Chr3:137770930-137770958 (+)	131 bp
Tssr31940	Chr3:137772386-137772409 (+)	1,585 bp
Tssr31941	Chr3:137772446-137772465 (+)	1,643 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 12/17/2024 MGI 6.24