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Cmc1 Gene Detail
Summary
  • Symbol
    Cmc1
  • Name
    C-X9-C motif containing 1
  • Synonyms
    2010110K16Rik, 2010312P05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915149
    NCBI Gene: 67899
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:117893590-117979245 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 69.87 cM, cytoband F3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2197 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915149
 protein coding gene Chr9:117893051-117979264 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035404
 protein coding gene Chr9:120722832-120802995 (-)
A/J MGP_AJ_G0035384
 protein coding gene Chr9:116271572-116349510 (-)
AKR/J MGP_AKRJ_G0035317
 protein coding gene Chr9:119249742-119335486 (-)
BALB/cJ MGP_BALBcJ_G0035380
 protein coding gene Chr9:116123482-116196399 (-)
C3H/HeJ MGP_C3HHeJ_G0035088
 protein coding gene Chr9:119751584-119830894 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035903
 protein coding gene Chr9:124040434-124114271 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032786
 protein coding gene Chr9:113487091-113564870 (-)
CAST/EiJ MGP_CASTEiJ_G0034392
 protein coding gene Chr9:119684965-119759252 (-)
CBA/J MGP_CBAJ_G0035055
 protein coding gene Chr9:128667348-128755998 (-)
DBA/2J MGP_DBA2J_G0035214
 protein coding gene Chr9:115721285-115797909 (-)
FVB/NJ MGP_FVBNJ_G0035161
 protein coding gene Chr9:114560821-114633311 (-)
LP/J MGP_LPJ_G0035293
 protein coding gene Chr9:121067432-121148764 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035202
 protein coding gene Chr9:129747108-129835539 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035922
 protein coding gene Chr9:119640772-119723871 (-)
PWK/PhJ MGP_PWKPhJ_G0034099
 protein coding gene Chr9:116092714-116165382 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033933
 protein coding gene Chr9:119741401-119816618 (-)
WSB/EiJ MGP_WSBEiJ_G0034513
 protein coding gene Chr9:119555018-119628129 (-)



Homology
more
  • Human Ortholog
    CMC1, C-X9-C motif containing 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CMC1, C-X9-C motif containing 1
  • Synonyms
    C3orf68, cmc1p
  • Links
    NCBI Gene ID: 152100
    neXtProt AC: NX_Q7Z7K0
    UniProt: Q7Z7K0

  • Chr Location
    3p24.1; chr3:28241584-28325142 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    13
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000039163 Ensembl Gene Model | MGI Sequence Detail 85656 C57BL/6J ±  kb
transcript ENSMUST00000044220 Ensembl | MGI Sequence Detail 1169 Not Applicable  
polypeptide ENSMUSP00000047904 Ensembl | MGI Sequence Detail 106 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • Protein Ontology
    PR:000005622 COX assembly mitochondrial protein
    (term hierarchy)
  • InterPro Domains
    IPR013892 Cytochrome c oxidase biogenesis protein Cmc1-like
  • GlyGen
    Q9CPZ8 1 site, 1 O-linked glycan (1 site)
Molecular
Reagents
less
  • All nucleic 13
    cDNA 13

    Microarray probesets 4
Other
Accession IDs
less
MGI:1923787, MGI:2143101
References
more
  • Summaries
    All 33
    Gene Ontology 4
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory