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Pclaf Gene Detail
Summary
  • Symbol
    Pclaf
  • Name
    PCNA clamp associated factor
  • Synonyms
    2810417H13Rik, mKIAA0101, p15(PAF)
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915276
    NCBI Gene: 68026
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:65797519-65810548 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 35.58 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    321 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915276
 protein coding gene Chr9:65797519-65810833 (+)
129S1/SvImJ MGP_129S1SvImJ_G0034968
 protein coding gene Chr9:65686666-65700996 (+)
A/J MGP_AJ_G0034948
 protein coding gene Chr9:63443679-63456442 (+)
AKR/J MGP_AKRJ_G0034878
 protein coding gene Chr9:64956172-64970189 (+)
BALB/cJ MGP_BALBcJ_G0034941
 protein coding gene Chr9:63159267-63172623 (+)
C3H/HeJ MGP_C3HHeJ_G0034651
 protein coding gene Chr9:65483737-65498312 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035460
 protein coding gene Chr9:67465538-67481336 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032371
 protein coding gene Chr9:63085518-63102286 (+)
CAST/EiJ MGP_CASTEiJ_G0033972
 protein coding gene Chr9:65673648-65688169 (+)
CBA/J MGP_CBAJ_G0034622
 protein coding gene Chr9:69820970-69824470 (+)
DBA/2J MGP_DBA2J_G0034781
 protein coding gene Chr9:63214475-63229629 (+)
FVB/NJ MGP_FVBNJ_G0034723
 protein coding gene Chr9:62552341-62566067 (+)
LP/J MGP_LPJ_G0034864
 protein coding gene Chr9:65927158-65941840 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034765
 protein coding gene Chr9:71072098-71086360 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035482
 protein coding gene Chr9:65064978-65080679 (+)
PWK/PhJ MGP_PWKPhJ_G0033676
 protein coding gene Chr9:63415562-63428548 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033510
 protein coding gene Chr9:65340928-65353113 (+)
WSB/EiJ MGP_WSBEiJ_G0034085
 protein coding gene Chr9:64954379-64967087 (+)



Homology
more
  • Human Ortholog
    PCLAF, PCNA clamp associated factor
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PCLAF, PCNA clamp associated factor
  • Synonyms
    KIAA0101, L5, NS5ATP9, OEATC, OEATC-1, OEATC1, p15(PAF), p15/PAF, p15PAF, PAF, PAF15
  • Links
    NCBI Gene ID: 9768
    neXtProt AC: NX_Q15004
    UniProt: Q15004

  • Chr Location
    15q22.31; chr15:64364304-64387687 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    22 phenotypes from 2 alleles in 2 genetic backgrounds
    1 phenotype from multigenic genotypes
    12 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit impaired hematopoietic stem cell function and development.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    25
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    795
  • Tissues
    61
  • cDNA Data
    21
  • Literature Summary
    9
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000040204 Ensembl Gene Model | MGI Sequence Detail 13030 C57BL/6J ±  kb
    transcript ENSMUST00000045802 Ensembl | MGI Sequence Detail 2188 Not Applicable  
    polypeptide ENSMUSP00000038877 Ensembl | MGI Sequence Detail 110 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 21
      cDNA 21

      Microarray probesets 7
    Other
    Accession IDs
    less
    MGI:2147825
    References
    more
    • Summaries
      All 51
      Developmental Gene Expression 9
      Gene Ontology 4
      Phenotypes 12
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:357933 Kim B, et al., PCLAF-DREAM drives alveolar cell plasticity for lung regeneration. Nat Commun. 2024 Oct 24;15(1):9169
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory