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Tm9sf2 Gene Detail
Summary
  • Symbol
    Tm9sf2
  • Name
    transmembrane 9 superfamily member 2
  • Synonyms
    1500001N15Rik, D14Ertd64e, P76
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915309
    NCBI Gene: 68059
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:122344450-122397016 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 65.86 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1134 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915309
 protein coding gene Chr14:122342290-122397016 (+)
129S1/SvImJ MGP_129S1SvImJ_G0021668
 protein coding gene Chr14:119991936-120052585 (+)
A/J MGP_AJ_G0021628
 protein coding gene Chr14:115336816-115390184 (+)
AKR/J MGP_AKRJ_G0021604
 protein coding gene Chr14:119073631-119129570 (+)
BALB/cJ MGP_BALBcJ_G0021634
 protein coding gene Chr14:115882355-115936602 (+)
C3H/HeJ MGP_C3HHeJ_G0021412
 protein coding gene Chr14:118957970-119012907 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022074
 protein coding gene Chr14:124600648-124656142 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0019612
 protein coding gene Chr14:111200883-111251896 (+)
CAST/EiJ MGP_CASTEiJ_G0020927
 protein coding gene Chr14:116873241-116930830 (+)
CBA/J MGP_CBAJ_G0021380
 protein coding gene Chr14:129335603-129396245 (+)
DBA/2J MGP_DBA2J_G0021503
 protein coding gene Chr14:115197988-115251515 (+)
FVB/NJ MGP_FVBNJ_G0021481
 protein coding gene Chr14:113552391-113604999 (+)
LP/J MGP_LPJ_G0021571
 protein coding gene Chr14:120906860-120962753 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0021508
 protein coding gene Chr14:134334884-134390128 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022097
 protein coding gene Chr14:118646388-118709727 (+)
PWK/PhJ MGP_PWKPhJ_G0020671
 protein coding gene Chr14:112256017-112308202 (+)
SPRET/EiJ MGP_SPRETEiJ_G0020509
 protein coding gene Chr14:114846304-114899930 (+)
WSB/EiJ MGP_WSBEiJ_G0020983
 protein coding gene Chr14:119330075-119385628 (+)



Homology
more
  • Human Ortholog
    TM9SF2, transmembrane 9 superfamily member 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TM9SF2, transmembrane 9 superfamily member 2
  • Synonyms
    Lnc-PCIR, P76
  • Links
    NCBI Gene ID: 9375
    neXtProt AC: NX_Q99805
    UniProt: Q99805

  • Chr Location
    13q32.3; chr13:99446311-99564048 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotypes from 1 allele in 1 genetic background
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    12
  • GO References
    5
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    851
  • Tissues
    39
  • cDNA Data
    182
  • Literature Summary
    4
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000025544 Ensembl Gene Model | MGI Sequence Detail 52567 C57BL/6J ±  kb
    transcript ENSMUST00000026624 Ensembl | MGI Sequence Detail 3107 Not Applicable  
    polypeptide ENSMUSP00000026624 Ensembl | MGI Sequence Detail 662 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 185
      cDNA 183
      Primer pair 2

      Microarray probesets 6
    Other
    Accession IDs
    less
    MGI:1098614, MGI:2145568
    References
    more
    • Summaries
      All 46
      Developmental Gene Expression 4
      Gene Ontology 5
      Phenotypes 11
    • Earliest
      J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
    • Latest
      J:348683 Zhao R, et al., Comparative analysis of the expression patterns of TM9SF family members in mice. Gene Expr Patterns. 2024 May 6;52:119366
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory