About   Help   FAQ
Tigd2 Gene Detail
Summary
  • Symbol
    Tigd2
  • Name
    tigger transposable element derived 2
  • Synonyms
    3632410O17Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915390
    NCBI Gene: 68140
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:59185855-59189018 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 28.29 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    134 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915390
 protein coding gene Chr6:59185855-59189018 (+)
129S1/SvImJ MGP_129S1SvImJ_G0030821
 protein coding gene Chr6:58848912-58852075 (+)
A/J MGP_AJ_G0030788
 protein coding gene Chr6:56304072-56307235 (+)
AKR/J MGP_AKRJ_G0030716
 protein coding gene Chr6:58157166-58160329 (+)
BALB/cJ MGP_BALBcJ_G0030800
 protein coding gene Chr6:56590621-56593784 (+)
C3H/HeJ MGP_C3HHeJ_G0030514
 protein coding gene Chr6:58133622-58136785 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031258
 protein coding gene Chr6:60128255-60131418 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028450
 protein coding gene Chr6:53303868-53307026 (+)
CAST/EiJ MGP_CASTEiJ_G0029912
 protein coding gene Chr6:57804321-57807484 (+)
CBA/J MGP_CBAJ_G0030487
 protein coding gene Chr6:62632117-62635280 (+)
DBA/2J MGP_DBA2J_G0030638
 protein coding gene Chr6:56006492-56009655 (+)
FVB/NJ MGP_FVBNJ_G0030591
 protein coding gene Chr6:55553480-55556643 (+)
LP/J MGP_LPJ_G0030723
 protein coding gene Chr6:58777854-58781017 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030626
 protein coding gene Chr6:65319301-65322464 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031284
 protein coding gene Chr6:58010513-58013676 (+)
PWK/PhJ MGP_PWKPhJ_G0029627
 protein coding gene Chr6:55760283-55763447 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029454
 protein coding gene Chr6:57217403-57220449 (+)
WSB/EiJ MGP_WSBEiJ_G0029993
 protein coding gene Chr6:58211147-58214310 (+)



Homology
more
  • Human Ortholog
    TIGD2, tigger transposable element derived 2
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TIGD2, tigger transposable element derived 2
  • Synonyms
    HEL106
  • Links
    NCBI Gene ID: 166815
    neXtProt AC: NX_Q4W5G0
    UniProt: Q4W5G0

  • Chr Location
    4q22.1; chr4:89111169-89114901 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    33
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 68140 NCBI Gene Model | MGI Sequence Detail 3164 C57BL/6J ±  kb
transcript NM_001081145 RefSeq | MGI Sequence Detail 3007 Not Specified  
polypeptide Q0VBL1 UniProt | EBI | MGI Sequence Detail 525 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000016332 tigger transposable element-derived protein 2
    (term hierarchy)
  • InterPro Domains
    IPR050863 Centromere and Transposable Element-Derived Protein
    IPR004875 DDE superfamily endonuclease domain
    IPR007889 DNA binding HTH domain, Psq-type
    IPR009057 Homeobox-like domain superfamily
    IPR006600 HTH CenpB-type DNA-binding domain
    IPR036388 Winged helix-like DNA-binding domain superfamily
Molecular
Reagents
less
  • All nucleic 35
    Genomic 2
    cDNA 33

    Microarray probesets 3
References
more
  • Summaries
    All 25
    Gene Ontology 3
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory