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Pate6 Gene Detail
Summary
  • Symbol
    Pate6
  • Name
    prostate and testis expressed 6
  • Synonyms
    9230110F15Rik, Anlp3, D730048I06Rik, mANLP2, Pate-A, Pate-C
  • Feature Type
    protein coding gene
  • IDs
    MGI:3839961
    NCBI Gene: 68171
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr9:35699346-35701408 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 20.45 cM, cytoband A5.3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    140 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3839961
 protein coding gene Chr9:35699346-35701408 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034546
 protein coding gene Chr9:33594373-33596435 (-)
A/J MGP_AJ_G0034524
 protein coding gene Chr9:32742162-32744222 (-)
AKR/J MGP_AKRJ_G0034450
 protein coding gene Chr9:33466411-33468473 (-)
BALB/cJ MGP_BALBcJ_G0034515
 protein coding gene Chr9:32646004-32648066 (-)
C3H/HeJ MGP_C3HHeJ_G0034227
 protein coding gene Chr9:33809667-33811729 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035036
 protein coding gene Chr9:34726926-34728988 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031966
 protein coding gene Chr9:31401424-31403485 (-)
CAST/EiJ MGP_CASTEiJ_G0033550
 protein coding gene Chr9:33696824-33698890 (-)
CBA/J MGP_CBAJ_G0034201
 protein coding gene Chr9:35889657-35891717 (-)
DBA/2J MGP_DBA2J_G0034358
 protein coding gene Chr9:32748817-32750879 (-)
FVB/NJ MGP_FVBNJ_G0034301
 protein coding gene Chr9:32133254-32135316 (-)
LP/J MGP_LPJ_G0034444
 protein coding gene Chr9:33853266-33855338 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034345
 protein coding gene Chr9:37488392-37490454 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035056
 protein coding gene Chr9:33418890-33420962 (-)
PWK/PhJ MGP_PWKPhJ_G0033255
 protein coding gene Chr9:32700967-32703041 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033090
 protein coding gene Chr9:33717289-33719363 (-)
WSB/EiJ MGP_WSBEiJ_G0033665
 protein coding gene Chr9:33193605-33195671 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    9
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 68171 NCBI Gene Model | MGI Sequence Detail 2063 C57BL/6J ±  kb
transcript NM_026593 RefSeq | MGI Sequence Detail 1334 C57BL/6  
polypeptide NP_080869 RefSeq | MGI Sequence Detail 106 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9

    Microarray probesets 2
Other
Accession IDs
less
MGI:1915421
References
more
  • Summaries
    All 20
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:279308 Fujihara Y, et al., Identification of multiple male reproductive tract-specific proteins that regulate sperm migration through the oviduct in mice. Proc Natl Acad Sci U S A. 2019 Sep 10;116(37):18498-18506
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory