1700105P06Rik Gene Detail

Summary

• Symbol
  1700105P06Rik
• Name
  RIKEN cDNA 1700105P06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1915479
  NCBI Gene: 654802
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:7360368-7360926 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  60 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1915479	lncRNA gene	Chr19:7359902-7361737 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003472	antisense lncRNA gene	Chr19:4514197-4515851 (+)
A/J	MGP_AJ_G0003451	antisense lncRNA gene	Chr19:4156824-4158593 (+)
AKR/J	MGP_AKRJ_G0003431	antisense lncRNA gene	Chr19:4290367-4292128 (+)
BALB/cJ	MGP_BALBcJ_G0003440	antisense lncRNA gene	Chr19:4272484-4274243 (+)
C3H/HeJ	MGP_C3HHeJ_G0003389	antisense lncRNA gene	Chr19:4422486-4424214 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003578	antisense lncRNA gene	Chr19:4602719-4604479 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003089	antisense lncRNA gene	Chr19:4066597-4068320 (+)
CAST/EiJ	MGP_CASTEiJ_G0003352	antisense lncRNA gene	Chr19:4325936-4329742 (+)
CBA/J	MGP_CBAJ_G0003386	antisense lncRNA gene	Chr19:4682729-4684510 (+)
DBA/2J	MGP_DBA2J_G0003394	antisense lncRNA gene	Chr19:4123084-4124845 (+)
FVB/NJ	MGP_FVBNJ_G0003412	antisense lncRNA gene	Chr19:4164219-4165968 (+)
LP/J	MGP_LPJ_G0003466	antisense lncRNA gene	Chr19:4362715-4365953 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003400	antisense lncRNA gene	Chr19:4574795-4576554 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003581	antisense lncRNA gene	Chr19:4444371-4446132 (+)
PWK/PhJ	MGP_PWKPhJ_G0003308	antisense lncRNA gene	Chr19:4176708-4178361 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003253	antisense lncRNA gene	Chr19:4242811-4244581 (+)
WSB/EiJ	MGP_WSBEiJ_G0003386	antisense lncRNA gene	Chr19:4340453-4342206 (+)

Homology

• Gene Tree
  1700105P06Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000099923 (Evidence)
• NCBI Gene
  654802

Representative Sequences			Length	Strain/Species
genomic	654802	NCBI Gene Model | MGI Sequence Detail	559	C57BL/6J
transcript	NR_045703	RefSeq | MGI Sequence Detail	568	ZRU/MplStud

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 3

References

• Summaries
  All 12

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 1700105P06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154750	Chr19:7360488-7360500 (+)	126 bp
Tssr154751	Chr19:7360508-7360525 (+)	149 bp