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Yipf1 Gene Detail
Summary
  • Symbol
    Yipf1
  • Name
    Yip1 domain family, member 1
  • Synonyms
    C030002N13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915532
    NCBI Gene: 230584
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:107171560-107217020 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 50.18 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1557 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915532
 protein coding gene Chr4:107149068-107217020 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028538
 protein coding gene Chr4:107999427-108050081 (+)
A/J MGP_AJ_G0028501
 protein coding gene Chr4:104124557-104170492 (+)
AKR/J MGP_AKRJ_G0028448
 protein coding gene Chr4:106689061-106735446 (+)
BALB/cJ MGP_BALBcJ_G0028520
 protein coding gene Chr4:104318963-104364275 (+)
C3H/HeJ MGP_C3HHeJ_G0028234
 protein coding gene Chr4:107425381-107474593 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028960
 protein coding gene Chr4:111876072-111928808 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026251
 protein coding gene Chr4:99407618-99453068 (+)
CAST/EiJ MGP_CASTEiJ_G0027670
 protein coding gene Chr4:105244309-105295865 (+)
CBA/J MGP_CBAJ_G0028203
 protein coding gene Chr4:115507058-115564345 (+)
DBA/2J MGP_DBA2J_G0028351
 protein coding gene Chr4:103748898-103795019 (+)
FVB/NJ MGP_FVBNJ_G0028319
 protein coding gene Chr4:102615691-102662611 (+)
LP/J MGP_LPJ_G0028452
 protein coding gene Chr4:108192401-108243556 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028345
 protein coding gene Chr4:120793685-120843979 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028996
 protein coding gene Chr4:106915464-106968253 (+)
PWK/PhJ MGP_PWKPhJ_G0027396
 protein coding gene Chr4:101992970-102041061 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027220
 protein coding gene Chr4:104310445-104356365 (+)
WSB/EiJ MGP_WSBEiJ_G0027751
 protein coding gene Chr4:107095032-107145120 (+)



Homology
more
  • Human Ortholog
    YIPF1, Yip1 domain family member 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    YIPF1, Yip1 domain family member 1
  • Synonyms
    DJ167A19.1, FinGER1, Yip5a, YIPFbeta3A
  • Links
    NCBI Gene ID: 54432
    neXtProt AC: NX_Q9Y548
    UniProt: Q9Y548

  • Chr Location
    1p32.3; chr1:53851719-53889798 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 2 genetic backgrounds
    15 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit no detectable phenotypic abnormalities.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    17
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    60
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000057375 Ensembl Gene Model | MGI Sequence Detail 45461 C57BL/6J ±  kb
transcript ENSMUST00000075693 Ensembl | MGI Sequence Detail 1321 Not Applicable  
polypeptide ENSMUSP00000075113 Ensembl | MGI Sequence Detail 306 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 60
    cDNA 60

    Microarray probesets 3
References
more
  • Summaries
    All 40
    Gene Ontology 6
    Phenotypes 15
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory