0610039K10Rik MGI Mouse Gene Detail - MGI:1915636

Sequence Map

Chr2:163486770-163487720 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1915636	lncRNA gene	Chr2:163486770-163487721 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003689	antisense lncRNA gene	Chr2:169002336-169004794 (+)
A/J	MGP_AJ_G0003671	antisense lncRNA gene	Chr2:162187243-162188194 (+)
AKR/J	MGP_AKRJ_G0003649	antisense lncRNA gene	Chr2:166983748-166984699 (+)
BALB/cJ	MGP_BALBcJ_G0003660	antisense lncRNA gene	Chr2:162517917-162518868 (+)
C3H/HeJ	MGP_C3HHeJ_G0003607	antisense lncRNA gene	Chr2:167337206-167338157 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003799	antisense lncRNA gene	Chr2:173932647-173933598 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003305	antisense lncRNA gene	Chr2:155489993-155490944 (+)
CAST/EiJ	MGP_CASTEiJ_G0003570	antisense lncRNA gene	Chr2:167735166-167736111 (+)
CBA/J	MGP_CBAJ_G0003604	antisense lncRNA gene	Chr2:180215070-180216021 (+)
DBA/2J	MGP_DBA2J_G0003611	antisense lncRNA gene	Chr2:161356479-161357430 (+)
FVB/NJ	MGP_FVBNJ_G0003632	antisense lncRNA gene	Chr2:159728620-159729571 (+)
LP/J	MGP_LPJ_G0003689	antisense lncRNA gene	Chr2:169126492-169129655 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003620	antisense lncRNA gene	Chr2:183869898-183870849 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003799	antisense lncRNA gene	Chr2:166877297-166878248 (+)
PWK/PhJ	MGP_PWKPhJ_G0003525	antisense lncRNA gene	Chr2:160921409-160922360 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003468	antisense lncRNA gene	Chr2:165752669-165753622 (+)
WSB/EiJ	MGP_WSBEiJ_G0003604	antisense lncRNA gene	Chr2:167728119-167729070 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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			Length	Strain/Species	Flank
genomic	68386	NCBI Gene Model \| MGI Sequence Detail	951	C57BL/6J	± kb
transcript	NR_028113	RefSeq \| MGI Sequence Detail	951	C57BL/6
polypeptide	Q9DCF0	UniProt \| EBI \| MGI Sequence Detail	104	Not Applicable

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Summaries

All 12
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 0610039K10Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr21481	Chr2:163487160-163487174 (+)	397 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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