1110032F04Rik MGI Mouse Gene Detail - MGI:1915975

Symbol

1110032F04Rik
Name

RIKEN cDNA 1110032F04 gene

Feature Type

protein coding gene
IDs

MGI:1915975
NCBI Gene: 68725
Alliance

gene page
Transcription Start Sites

5 TSS

Sequence Map

Chr3:68776919-68779496 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 3, 32.06 cM
Mapping Data

2 experiments

SNPs within 2kb

140 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1915975	protein coding gene	Chr3:68776684-68779496 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0027289	protein coding gene	Chr3:68090739-68093316 (+)
A/J	MGP_AJ_G0027251	protein coding gene	Chr3:66061126-66063703 (+)
AKR/J	MGP_AKRJ_G0027219	protein coding gene	Chr3:67474718-67477293 (+)
BALB/cJ	MGP_BALBcJ_G0027262	protein coding gene	Chr3:65936989-65939566 (+)
C3H/HeJ	MGP_C3HHeJ_G0027006	protein coding gene	Chr3:67722056-67724633 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0027708	protein coding gene	Chr3:70627883-70630460 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0025061	protein coding gene	Chr3:62328808-62331467 (+)
CAST/EiJ	MGP_CASTEiJ_G0026453	protein coding gene	Chr3:67667891-67670439 (+)
CBA/J	MGP_CBAJ_G0026981	protein coding gene	Chr3:72821855-72824432 (+)
DBA/2J	MGP_DBA2J_G0027117	protein coding gene	Chr3:65567086-65569663 (+)
FVB/NJ	MGP_FVBNJ_G0027085	protein coding gene	Chr3:64192076-64194653 (+)
LP/J	MGP_LPJ_G0027225	protein coding gene	Chr3:69027521-69030098 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0027104	protein coding gene	Chr3:77436597-77439174 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0027766	protein coding gene	Chr3:67363024-67365601 (+)
PWK/PhJ	MGP_PWKPhJ_G0026187	protein coding gene	Chr3:65295192-65297765 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0026003	protein coding gene	Chr3:66465740-66469572 (+)
WSB/EiJ	MGP_WSBEiJ_G0026531	protein coding gene	Chr3:67498492-67501069 (+)

Human Ortholog

C3orf80, chromosome 3 open reading frame 80

Vertebrate Orthologs

2

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

C3orf80, chromosome 3 open reading frame 80
Links

HGNC:40048

NCBI Gene ID: 401097

neXtProt AC: NX_F5H4A9

UniProt: F5H4A9
Chr Location

3q25.33; chr3:160225422-160228213 (+) GRCh38

MGI Vertebrate Homology

1110032F04Rik stringent orthology
1 human;1 mouse;1 rat
HCOP

vertebrate homology predictions: C3orf80
Gene Tree

1110032F04Rik

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References

1 with disease annotations

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Phenotype Summary

4 phenotype references

All Mutations and Alleles

2
Chemically induced (other)

1
Radiation induced

1
Genomic Mutations

2 involving 1110032F04Rik
Incidental Mutations

Mutagenetix , APF , CvDC
Find Mice (IMSR)

10 strains or lines available

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All GO Annotations

1
GO References

1

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

7

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

32
RefSeq

2
UniProt

1
CCDS

CCDS50931.1

Ensembl

ENSMUSG00000046999 (Evidence)
NCBI Gene

68725

			Length	Strain/Species	Flank
genomic	ENSMUSG00000046999	Ensembl Gene Model \| MGI Sequence Detail	2578	C57BL/6J	± kb
transcript	ENSMUST00000054551	Ensembl \| MGI Sequence Detail	2578	Not Applicable
polypeptide	ENSMUSP00000056782	Ensembl \| MGI Sequence Detail	247	Not Applicable

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UniProt

1 Sequence
Protein Ontology

PR:000059735 uncharacterized membrane protein C3orf80

(term hierarchy)
InterPro Domains

IPR031696 Protein of unknown function DUF4719
GlyGen

E9Q0B3 1 site, 1 N-linked glycan (1 site)

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All nucleic 8

cDNA 8

Microarray probesets 5

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MGI:2139625

Summaries

All 23

Diseases 1

Gene Ontology 1

Phenotypes 4
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for 1110032F04Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29501	Chr3:68776138-68776146 (+)	-777 bp
Tssr29502	Chr3:68776640-68776655 (+)	-271 bp
Tssr29503	Chr3:68776670-68776732 (+)	-218 bp
Tssr29504	Chr3:68776896-68776922 (+)	-10 bp
Tssr29505	Chr3:68776979-68776992 (+)	67 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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