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Cdhr3 Gene Detail
Summary
  • Symbol
    Cdhr3
  • Name
    cadherin-related family member 3
  • Synonyms
    1110049B09Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916014
    NCBI Gene: 68764
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:33083795-33142874 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 13.95 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2005 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916014
 protein coding gene Chr12:33083781-33142900 (-)
129S1/SvImJ MGP_129S1SvImJ_G0019673
 protein coding gene Chr12:31083019-31149492 (-)
A/J MGP_AJ_G0019640
 protein coding gene Chr12:30156225-30218702 (-)
AKR/J MGP_AKRJ_G0019611
 protein coding gene Chr12:31143050-31209813 (-)
BALB/cJ MGP_BALBcJ_G0019617
 protein coding gene Chr12:30378645-30441808 (-)
C3H/HeJ MGP_C3HHeJ_G0019421
 protein coding gene Chr12:30983064-31056937 (-)
C57BL/6NJ MGP_C57BL6NJ_G0020064
 protein coding gene Chr12:32008925-32071663 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0017689
 protein coding gene Chr12:29446536-29506994 (-)
CAST/EiJ MGP_CASTEiJ_G0018976
 protein coding gene Chr12:26029500-26101909 (-)
CBA/J MGP_CBAJ_G0019393
 protein coding gene Chr12:33039972-33113338 (-)
DBA/2J MGP_DBA2J_G0019506
 protein coding gene Chr12:29978816-30038870 (-)
FVB/NJ MGP_FVBNJ_G0019497
 protein coding gene Chr12:29767389-29827284 (-)
LP/J MGP_LPJ_G0019576
 protein coding gene Chr12:31161556-31225891 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0019532
 protein coding gene Chr12:32676869-32736724 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020104
 protein coding gene Chr12:30644663-30708332 (-)
PWK/PhJ MGP_PWKPhJ_G0018743
 protein coding gene Chr12:24750243-24812682 (-)
SPRET/EiJ MGP_SPRETEiJ_G0018531
 protein coding gene Chr12:25268288-25330064 (-)
WSB/EiJ MGP_WSBEiJ_G0019026
 protein coding gene Chr12:30882254-30948689 (-)



Homology
more
  • Human Ortholog
    CDHR3, cadherin related family member 3
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CDHR3, cadherin related family member 3
  • Synonyms
    CDH28
  • Links
    NCBI Gene ID: 222256
    neXtProt AC: NX_Q6ZTQ4
    UniProt: Q6ZTQ4

  • Chr Location
    7q22.3; chr7:105876796-106036432 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    3 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    6
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    4
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000035860 Ensembl Gene Model | MGI Sequence Detail 59080 C57BL/6J ±  kb
transcript ENSMUST00000095774 Ensembl | MGI Sequence Detail 2953 Not Applicable  
polypeptide ENSMUSP00000093449 Ensembl | MGI Sequence Detail 831 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 5
    Genomic 1
    cDNA 4

    Microarray probesets 2
Other
Accession IDs
less
MGI:2145074
References
more
  • Summaries
    All 24
    Gene Ontology 4
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory