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Pdcl3 Gene Detail
Summary
  • Symbol
    Pdcl3
  • Name
    phosducin-like 3
  • Synonyms
    1110061A19Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916083
    NCBI Gene: 68833
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:39026895-39036317 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 17.36 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    469 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916083
 protein coding gene Chr1:39024689-39036319 (+)
129S1/SvImJ MGP_129S1SvImJ_G0015954
 protein coding gene Chr1:37692732-37702588 (+)
A/J MGP_AJ_G0015938
 protein coding gene Chr1:36651213-36660048 (+)
AKR/J MGP_AKRJ_G0015893
 protein coding gene Chr1:37151030-37160349 (+)
BALB/cJ MGP_BALBcJ_G0015892
 protein coding gene Chr1:36298165-36309933 (+)
C3H/HeJ MGP_C3HHeJ_G0015725
 protein coding gene Chr1:37384969-37393588 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016345
 protein coding gene Chr1:39288717-39298453 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014067
 protein coding gene Chr1:33616785-33627674 (+)
CAST/EiJ MGP_CASTEiJ_G0015306
 protein coding gene Chr1:37273327-37281528 (+)
CBA/J MGP_CBAJ_G0015697
 protein coding gene Chr1:40416242-40425448 (+)
DBA/2J MGP_DBA2J_G0015798
 protein coding gene Chr1:35938010-35950007 (+)
FVB/NJ MGP_FVBNJ_G0015800
 protein coding gene Chr1:35476334-35484740 (+)
LP/J MGP_LPJ_G0015868
 protein coding gene Chr1:38044201-38055550 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0015820
 protein coding gene Chr1:42492275-42500798 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016392
 protein coding gene Chr1:37250970-37259342 (+)
PWK/PhJ MGP_PWKPhJ_G0015089
 protein coding gene Chr1:35747876-35756155 (+)
SPRET/EiJ MGP_SPRETEiJ_G0014871
 protein coding gene Chr1:37174335-37183725 (+)
WSB/EiJ MGP_WSBEiJ_G0015368
 protein coding gene Chr1:37199206-37208771 (+)



Homology
more
  • Human Ortholog
    PDCL3, phosducin like 3
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PDCL3, phosducin like 3
  • Synonyms
    HTPHLP, PHLP2A, PHLP3, VIAF, VIAF1
  • Links
    NCBI Gene ID: 79031
    neXtProt AC: NX_Q9H2J4
    UniProt: Q9H2J4

  • Chr Location
    2q11.2; chr2:100562993-100576739 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    12
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    2
  • Gene trapped
    9
  • Genomic Mutations
    1 involving Pdcl3
  • Find Mice (IMSR)
    18 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    41
  • GO References
    11
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    102
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 68833 NCBI Gene Model | MGI Sequence Detail 9423 C57BL/6J ±  kb
transcript NM_026850 RefSeq | MGI Sequence Detail 1706 C57BL/6  
polypeptide Q8BVF2 UniProt | EBI | MGI Sequence Detail 240 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 102
    cDNA 102

    Microarray probesets 2
Other
Accession IDs
less
MGI:2138686
References
more
  • Summaries
    All 35
    Gene Ontology 11
    Phenotypes 5
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:276383 Krzemien-Ojak L, et al., Interaction of a Novel Chaperone PhLP2A With the Heat Shock Protein Hsp90. J Cell Biochem. 2017 Feb;118(2):420-429
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory