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Dcaf12 Gene Detail
Summary
  • Symbol
    Dcaf12
  • Name
    DDB1 and CUL4 associated factor 12
  • Synonyms
    1500001L20Rik, 5830424K06Rik, Wdr40a
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916220
    NCBI Gene: 68970
  • Alliance
  • Transcription Start Sites
    11 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:41291300-41314889 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 4, 21.32 cM, cytoband B1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    537 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916220
protein coding gene Chr4:41291300-41316749 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028158
protein coding gene Chr4:39227338-39252431 (-)
A/J MGP_AJ_G0028116
protein coding gene Chr4:37738722-37762254 (-)
AKR/J MGP_AKRJ_G0028079
protein coding gene Chr4:38710306-38733912 (-)
BALB/cJ MGP_BALBcJ_G0028128
protein coding gene Chr4:38070814-38094380 (-)
C3H/HeJ MGP_C3HHeJ_G0027856
protein coding gene Chr4:39256560-39280115 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028569
protein coding gene Chr4:40682276-40705959 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025910
protein coding gene Chr4:35389791-35412817 (-)
CAST/EiJ MGP_CASTEiJ_G0027312
protein coding gene Chr4:38931591-38955205 (-)
CBA/J MGP_CBAJ_G0027828
protein coding gene Chr4:42073114-42096681 (-)
DBA/2J MGP_DBA2J_G0027972
protein coding gene Chr4:37659731-37683331 (-)
FVB/NJ MGP_FVBNJ_G0027939
protein coding gene Chr4:36992142-37015757 (-)
LP/J MGP_LPJ_G0028080
protein coding gene Chr4:39293124-39319597 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027972
protein coding gene Chr4:45379675-45404919 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028628
protein coding gene Chr4:38831493-38856691 (-)
PWK/PhJ MGP_PWKPhJ_G0027031
protein coding gene Chr4:37675530-37700183 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026858
protein coding gene Chr4:38552811-38579436 (-)
WSB/EiJ MGP_WSBEiJ_G0027388
protein coding gene Chr4:38806623-38832004 (-)



Homology
more
  • Human Ortholog
    DCAF12, DDB1 and CUL4 associated factor 12
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    DCAF12, DDB1 and CUL4 associated factor 12
  • Synonyms
    CT102, KIAA1892, TCC52, WDR40A
  • Links
    NCBI Gene ID: 25853
    neXtProt AC: NX_Q5T6F0
    UniProt: Q5T6F0

  • Chr Location
    9p13.3; chr9:34086387-34127399 (-)  GRCh38

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotypes from 1 allele in 1 genetic background
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028436 Ensembl Gene Model | MGI Sequence Detail 23590 C57BL/6J ±  kb
transcript ENSMUST00000030145 Ensembl | MGI Sequence Detail 3442 Not Applicable  
polypeptide ENSMUSP00000030145 Ensembl | MGI Sequence Detail 453 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 162
    cDNA 161
    Primer pair 1

    Microarray probesets 8
Other
Accession IDs
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MGI:1923288, MGI:2140155, MGI:2140386
References
more
  • Summaries
    All 40
    Developmental Gene Expression 1
    Gene Ontology 6
    Phenotypes 10
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory