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Snapc3 Gene Detail
Summary
  • Symbol
    Snapc3
  • Name
    small nuclear RNA activating complex, polypeptide 3
  • Synonyms
    1810020H02Rik, 4930558A07Rik, 5031401C21Rik, E030018J20Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916338
    NCBI Gene: 77634
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:83335961-83385913 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 39.46 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1067 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916338
 protein coding gene Chr4:83333948-83391256 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028403
 protein coding gene Chr4:83021495-83068259 (+)
A/J MGP_AJ_G0028364
 protein coding gene Chr4:80126470-80172020 (+)
AKR/J MGP_AKRJ_G0028313
 protein coding gene Chr4:82217191-82261759 (+)
BALB/cJ MGP_BALBcJ_G0028384
 protein coding gene Chr4:80358863-80405861 (+)
C3H/HeJ MGP_C3HHeJ_G0028099
 protein coding gene Chr4:82806852-82855127 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028823
 protein coding gene Chr4:86288466-86346800 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026123
 protein coding gene Chr4:76088979-76125897 (+)
CAST/EiJ MGP_CASTEiJ_G0027540
 protein coding gene Chr4:80720845-80767674 (+)
CBA/J MGP_CBAJ_G0028068
 protein coding gene Chr4:88968854-89019732 (+)
DBA/2J MGP_DBA2J_G0028217
 protein coding gene Chr4:79909325-79953057 (+)
FVB/NJ MGP_FVBNJ_G0028183
 protein coding gene Chr4:78922721-78966763 (+)
LP/J MGP_LPJ_G0028317
 protein coding gene Chr4:83388497-83433979 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028212
 protein coding gene Chr4:94050228-94101154 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028860
 protein coding gene Chr4:82267722-82316628 (+)
PWK/PhJ MGP_PWKPhJ_G0027263
 protein coding gene Chr4:78261208-78305576 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027088
 protein coding gene Chr4:79800494-79848988 (+)
WSB/EiJ MGP_WSBEiJ_G0027616
 protein coding gene Chr4:82436994-82481794 (+)



Homology
more
  • Human Ortholog
    SNAPC3, small nuclear RNA activating complex polypeptide 3
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SNAPC3, small nuclear RNA activating complex polypeptide 3
  • Synonyms
    PTFbeta, SNAP50
  • Links
    NCBI Gene ID: 6619
    neXtProt AC: NX_Q92966
    UniProt: Q92966

  • Chr Location
    9p22.3; chr9:15422734-15466735 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    13
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    827
  • Tissues
    34
  • cDNA Data
    22
  • Literature Summary
    4
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028483 Ensembl Gene Model | MGI Sequence Detail 49953 C57BL/6J ±  kb
transcript ENSMUST00000143533 Ensembl | MGI Sequence Detail 2710 Not Applicable  
polypeptide ENSMUSP00000123793 Ensembl | MGI Sequence Detail 407 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 23
    cDNA 22
    Primer pair 1

    Microarray probesets 10
Other
Accession IDs
less
MGI:1914912, MGI:1924884, MGI:2140255, MGI:2442899
References
more
  • Summaries
    All 41
    Developmental Gene Expression 4
    Gene Ontology 4
    Phenotypes 12
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
  • Latest
    J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory