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Ydjc Gene Detail
Summary
  • Symbol
    Ydjc
  • Name
    YdjC homolog (bacterial)
  • Synonyms
    1810015A11Rik, 4930521M19Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916351
    NCBI Gene: 69101
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:16964813-16966721 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, 10.63 cM, cytoband B1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    75 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916351
 protein coding gene Chr16:16962485-16978565 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022572
 protein coding gene Chr16:14269437-14285526 (+)
A/J MGP_AJ_G0022533
 protein coding gene Chr16:13559559-13576744 (+)
AKR/J MGP_AKRJ_G0022510
 protein coding gene Chr16:14108437-14124888 (+)
BALB/cJ MGP_BALBcJ_G0022536
 protein coding gene Chr16:13709265-13725413 (+)
C3H/HeJ MGP_C3HHeJ_G0022303
 protein coding gene Chr16:14231397-14249522 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022987
 protein coding gene Chr16:14485167-14503960 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020507
 protein coding gene Chr16:13644284-13660302 (+)
CAST/EiJ MGP_CASTEiJ_G0021831
 protein coding gene Chr16:14143843-14162966 (+)
CBA/J MGP_CBAJ_G0022274
 protein coding gene Chr16:15154865-15171390 (+)
DBA/2J MGP_DBA2J_G0022404
 protein coding gene Chr16:13492271-13508315 (+)
FVB/NJ MGP_FVBNJ_G0022380
 protein coding gene Chr16:13527059-13543356 (+)
LP/J MGP_LPJ_G0022471
 protein coding gene Chr16:14039727-14055829 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022401
 protein coding gene Chr16:14854480-14871972 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022998
 protein coding gene Chr16:14029355-14045447 (+)
PWK/PhJ MGP_PWKPhJ_G0021574
 protein coding gene Chr16:13735069-13751026 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021402
 protein coding gene Chr16:14032260-14044492 (+)
WSB/EiJ MGP_WSBEiJ_G0021878
 protein coding gene Chr16:14035578-14053702 (+)



Homology
more
  • Human Ortholog
    YDJC, YdjC chitooligosaccharide deacetylase homolog
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    YDJC, YdjC chitooligosaccharide deacetylase homolog
  • Links
    NCBI Gene ID: 150223
    neXtProt AC: NX_A8MPS7
    UniProt: A8MPS7

  • Chr Location
    22q11.21; chr22:21628089-21630064 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    14 phenotypes from 2 alleles in 2 genetic backgrounds
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    719
  • Tissues
    6
  • cDNA Data
    29
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 69101 NCBI Gene Model | MGI Sequence Detail 1909 C57BL/6J ±  kb
    transcript NM_001378794 RefSeq | MGI Sequence Detail 1330 C57BL/6  
    polypeptide Q14BV6 UniProt | EBI | MGI Sequence Detail 310 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 31
      Genomic 2
      cDNA 29

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:1918909
    References
    more
    • Summaries
      All 40
      Developmental Gene Expression 1
      Gene Ontology 4
      Phenotypes 11
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory