2410006H16Rik Gene Detail

Summary

• Symbol
  2410006H16Rik
• Name
  RIKEN cDNA 2410006H16 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916471
  NCBI Gene: 69221
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:62493703-62495632 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 38.51 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916471	lncRNA gene	Chr11:62493650-62495725 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015177	unclassified non-coding RNA gene	Chr11:62651283-62653212 (+)
A/J	MGP_AJ_G0015151	unclassified non-coding RNA gene	Chr11:60335695-60337625 (+)
AKR/J	MGP_AKRJ_G0015114	unclassified non-coding RNA gene	Chr11:62197561-62199490 (+)
BALB/cJ	MGP_BALBcJ_G0015113	unclassified non-coding RNA gene	Chr11:60618298-60620228 (+)
C3H/HeJ	MGP_C3HHeJ_G0014937	unclassified non-coding RNA gene	Chr11:62177799-62179729 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015570	unclassified non-coding RNA gene	Chr11:64631424-64633354 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013314	unclassified non-coding RNA gene	Chr11:57427413-57429725 (+)
CAST/EiJ	MGP_CASTEiJ_G0014490	unclassified non-coding RNA gene	Chr11:62319869-62321798 (+)
CBA/J	MGP_CBAJ_G0014916	unclassified non-coding RNA gene	Chr11:67417536-67419466 (+)
DBA/2J	MGP_DBA2J_G0015009	unclassified non-coding RNA gene	Chr11:59896620-59898549 (+)
FVB/NJ	MGP_FVBNJ_G0015021	unclassified non-coding RNA gene	Chr11:59564286-59566215 (+)
LP/J	MGP_LPJ_G0015090	unclassified non-coding RNA gene	Chr11:63205716-63207832 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015047	unclassified non-coding RNA gene	Chr11:68406950-68408879 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015609	unclassified non-coding RNA gene	Chr11:62352657-62354586 (+)
PWK/PhJ	MGP_PWKPhJ_G0014282	unclassified non-coding RNA gene	Chr11:60516126-60518138 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014069	unclassified non-coding RNA gene	Chr11:62201651-62203574 (+)
WSB/EiJ	MGP_WSBEiJ_G0014593	unclassified non-coding RNA gene	Chr11:61966729-61968658 (+)

Homology

• Gene Tree
  2410006H16Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  12 phenotype references
  

• All Mutations and Alleles
  60
• Chemically induced (other)
  1
• Gene trapped
  59
• Genomic Mutations
  1 involving 2410006H16Rik
• Find Mice (IMSR)
  25 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  27

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  41
• RefSeq
  1

• Ensembl
  ENSMUSG00000086841 (Evidence)
• NCBI Gene
  69221

Representative Sequences			Length	Strain/Species
genomic	69221	NCBI Gene Model | MGI Sequence Detail	1930	C57BL/6J
transcript	NR_030738	RefSeq | MGI Sequence Detail	461	C57BL/6

Molecular
Reagents

• All nucleic 27

  cDNA 27

  
  

  Microarray probesets 2

References

• Summaries
  All 25

  Phenotypes 12
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:198500 Nakahara M, et al., Gene-trap mutagenesis using Mol/MSM-1 embryonic stem cells from MSM/Ms mice. Mamm Genome. 2013 Jun;24(5-6):228-39

TSS for 2410006H16Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr102048	Chr11:62493693-62493712 (+)	0 bp
Tssr102049	Chr11:62493783-62493817 (+)	97 bp