1700001G11Rik Gene Detail

Summary

• Symbol
  1700001G11Rik
• Name
  RIKEN cDNA 1700001G11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916553
  NCBI Gene: 69303
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr14:66532776-66534578 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 34.44 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  198 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916553	lncRNA gene	Chr14:66532771-66534578 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015271	unclassified non-coding RNA gene	Chr14:60968169-60969961 (-)
A/J	MGP_AJ_G0015245	unclassified non-coding RNA gene	Chr14:59517588-59519382 (-)
AKR/J	MGP_AKRJ_G0015208	unclassified non-coding RNA gene	Chr14:61590751-61592546 (-)
BALB/cJ	MGP_BALBcJ_G0015209	unclassified non-coding RNA gene	Chr14:59487634-59489432 (-)
C3H/HeJ	MGP_C3HHeJ_G0015033	unclassified non-coding RNA gene	Chr14:61274018-61276061 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015664	unclassified non-coding RNA gene	Chr14:63778560-63780353 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013405	unclassified non-coding RNA gene	Chr14:57452668-57454492 (-)
CAST/EiJ	MGP_CASTEiJ_G0014584	unclassified non-coding RNA gene	Chr14:57749351-57751147 (-)
CBA/J	MGP_CBAJ_G0015013	unclassified non-coding RNA gene	Chr14:65714820-65716612 (-)
DBA/2J	MGP_DBA2J_G0015106	unclassified non-coding RNA gene	Chr14:59171202-59173039 (-)
FVB/NJ	MGP_FVBNJ_G0015114	unclassified non-coding RNA gene	Chr14:58582002-58584319 (-)
LP/J	MGP_LPJ_G0015187	unclassified non-coding RNA gene	Chr14:62014380-62016207 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015141	unclassified non-coding RNA gene	Chr14:64764346-64766139 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015703	unclassified non-coding RNA gene	Chr14:60788570-60790365 (-)
PWK/PhJ	MGP_PWKPhJ_G0014376	unclassified non-coding RNA gene	Chr14:55905543-55907405 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014163	unclassified non-coding RNA gene	Chr14:56750723-56752521 (-)
WSB/EiJ	MGP_WSBEiJ_G0014691	unclassified non-coding RNA gene	Chr14:61090943-61092750 (-)

Homology

• Gene Tree
  1700001G11Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving 1700001G11Rik
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  13

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000085984 (Evidence)
• NCBI Gene
  69303

Representative Sequences			Length	Strain/Species
genomic	69303	NCBI Gene Model | MGI Sequence Detail	1803	C57BL/6J
transcript	NR_038077	RefSeq | MGI Sequence Detail	771	C57BL/6

Molecular
Reagents

• All nucleic 13

  cDNA 13

  
  

  Microarray probesets 2

References

• Summaries
  All 14

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700001G11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr129314	Chr14:66534413-66534426 (-)	158 bp
Tssr129313	Chr14:66534358-66534403 (-)	197 bp
Tssr129312	Chr14:66534304-66534326 (-)	263 bp