1700010J16Rik Gene Detail

Summary

• Symbol
  1700010J16Rik
• Name
  RIKEN cDNA 1700010J16 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916605
  NCBI Gene: 69355
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:112562831-112621504 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1705 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916605	lncRNA gene	Chr10:112562793-112621507 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005156	lincRNA gene	Chr10:115277007-115338195 (+)
A/J	MGP_AJ_G0005139	lincRNA gene	Chr10:110888871-110947332 (+)
AKR/J	MGP_AKRJ_G0005117	lincRNA gene	Chr10:114137941-114196947 (+)
BALB/cJ	MGP_BALBcJ_G0005119	lincRNA gene	Chr10:111235293-111293489 (+)
C3H/HeJ	MGP_C3HHeJ_G0005068	lincRNA gene	Chr10:114279419-114338488 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005270	lincRNA gene	Chr10:119271193-119339035 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004675	lincRNA gene	Chr10:105610825-105666858 (+)
CAST/EiJ	MGP_CASTEiJ_G0005016	lincRNA gene	Chr10:114448750-114513202 (+)
CBA/J	MGP_CBAJ_G0005059	lincRNA gene	Chr10:123954574-124019994 (+)
DBA/2J	MGP_DBA2J_G0005076	lincRNA gene	Chr10:110035815-110096308 (+)
FVB/NJ	MGP_FVBNJ_G0005100	lincRNA gene	Chr10:108984983-109044083 (+)
LP/J	MGP_LPJ_G0005157	lincRNA gene	Chr10:115891165-115961755 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005083	lincRNA gene	Chr10:126557880-126653774 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005275	lincRNA gene	Chr10:114101998-114164911 (+)
PWK/PhJ	MGP_PWKPhJ_G0004966	lincRNA gene	Chr10:110051623-110110850 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004892	lincRNA gene	Chr10:112853595-112913877 (+)
WSB/EiJ	MGP_WSBEiJ_G0005063	lincRNA gene	Chr10:114299634-114371388 (+)

Homology

• Gene Tree
  1700010J16Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 1700010J16Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000100314 (Evidence)
• NCBI Gene
  69355

Representative Sequences			Length	Strain/Species
genomic	69355	NCBI Gene Model | MGI Sequence Detail	58674	C57BL/6J
transcript	NR_040579	RefSeq | MGI Sequence Detail	887	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 13

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700010J16Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95798	Chr10:112562818-112562832 (+)	-6 bp