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Cypt3 Gene Detail
Summary
  • Symbol
    Cypt3
  • Name
    cysteine-rich perinuclear theca 3
  • Synonyms
    1700006H02Rik, Ckt1r1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916611
    NCBI Gene: 69361
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:152341589-152342425 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 68.65 cM, cytoband F3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    98 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916611
 protein coding gene ChrX:152341589-152342431 (+)
129S1/SvImJ MGP_129S1SvImJ_G0036196
 protein coding gene ChrX:151383907-151384743 (+)
A/J MGP_AJ_G0036173
 protein coding gene ChrX:150570304-150571140 (+)
AKR/J MGP_AKRJ_G0036098
 protein coding gene ChrX:155408023-155408859 (+)
BALB/cJ MGP_BALBcJ_G0036164
 protein coding gene ChrX:148744319-148745155 (+)
C3H/HeJ MGP_C3HHeJ_G0035871
 protein coding gene ChrX:151644009-151644845 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036688
 protein coding gene ChrX:155766646-155767482 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033512
 protein coding gene ChrX:142226715-142227564 (+)
CAST/EiJ MGP_CASTEiJ_G0034960
 protein coding gene ChrX:86898364-86899275 (+)
CBA/J MGP_CBAJ_G0035848
 protein coding gene ChrX:160265384-160266220 (+)
DBA/2J MGP_DBA2J_G0036006
 protein coding gene ChrX:149623336-149624172 (+)
FVB/NJ MGP_FVBNJ_G0035940
 protein coding gene ChrX:148754511-148755347 (+)
LP/J MGP_LPJ_G0036097
 protein coding gene ChrX:152460409-152461245 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035976
 protein coding gene ChrX:168525406-168526242 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036723
 protein coding gene ChrX:150903147-150903983 (+)
PWK/PhJ MGP_PWKPhJ_G0034857
 protein coding gene ChrX:127903695-127904531 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034682
 protein coding gene ChrX:131391755-131392568 (+)
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000048573 Ensembl Gene Model | MGI Sequence Detail 837 C57BL/6J ±  kb
transcript ENSMUST00000112573 Ensembl | MGI Sequence Detail 669 Not Applicable  
polypeptide ENSMUSP00000108192 Ensembl | MGI Sequence Detail 174 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    6 Sequences
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 1
References
more
  • Summaries
    All 16
    Phenotypes 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:105251 Hansen MA, et al., Identification and expression profiling of 10 novel spermatid expressed CYPT genes. Mol Reprod Dev. 2006 Feb 13;73(5):568-579
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory