2310034O05Rik Gene Detail

Summary

• Symbol
  2310034O05Rik
• Name
  RIKEN cDNA 2310034O05 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916821
  NCBI Gene: 69571
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:100358551-100365908 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  375 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916821	lncRNA gene	Chr5:100358510-100365916 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006717	lincRNA gene	Chr5:101666659-101674020 (+)
A/J	MGP_AJ_G0006711	lincRNA gene	Chr5:97888937-97896244 (+)
AKR/J	MGP_AKRJ_G0006681	lincRNA gene	Chr5:101132377-101139685 (+)
BALB/cJ	MGP_BALBcJ_G0006686	lincRNA gene	Chr5:98916446-98923753 (+)
C3H/HeJ	MGP_C3HHeJ_G0006632	lincRNA gene	Chr5:101469020-101476331 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006851	lincRNA gene	Chr5:105912572-105919913 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006108	lincRNA gene	Chr5:93139342-93146589 (+)
CAST/EiJ	MGP_CASTEiJ_G0006555	lincRNA gene	Chr5:100108059-100115360 (+)
CBA/J	MGP_CBAJ_G0006613	lincRNA gene	Chr5:109570408-109577760 (+)
DBA/2J	MGP_DBA2J_G0006634	lincRNA gene	Chr5:98086795-98094153 (+)
FVB/NJ	MGP_FVBNJ_G0006658	lincRNA gene	Chr5:96891064-96898388 (+)
LP/J	MGP_LPJ_G0006718	lincRNA gene	Chr5:102281713-102289073 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006642	lincRNA gene	Chr5:114645846-114654754 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006853	lincRNA gene	Chr5:100608052-100615364 (+)
PWK/PhJ	MGP_PWKPhJ_G0006494	lincRNA gene	Chr5:96518281-96525610 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006400	lincRNA gene	Chr5:98273669-98282399 (+)
WSB/EiJ	MGP_WSBEiJ_G0006606	lincRNA gene	Chr5:100920104-100927424 (+)

Homology

• Gene Tree
  2310034O05Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving 2310034O05Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000100157 (Evidence)
• NCBI Gene
  69571

Representative Sequences			Length	Strain/Species
genomic	69571	NCBI Gene Model | MGI Sequence Detail	7358	C57BL/6J
transcript	NR_040679	RefSeq | MGI Sequence Detail	1107	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 2310034O05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47478	Chr5:100358548-100358557 (+)	2 bp