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Lypd5 Gene Detail
Summary
  • Symbol
    Lypd5
  • Name
    Ly6/Plaur domain containing 5
  • Synonyms
    2210003I03Rik, 2310011E23Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1924192
    NCBI Gene: 76942
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:24048621-24053672 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 10.27 cM, cytoband A3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    284 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1924192
 protein coding gene Chr7:24048621-24054534 (+)
129S1/SvImJ MGP_129S1SvImJ_G0031825
 protein coding gene Chr7:22664584-22670795 (+)
A/J MGP_AJ_G0031804
 protein coding gene Chr7:22146515-22152929 (+)
AKR/J MGP_AKRJ_G0031733
 protein coding gene Chr7:22648924-22654729 (+)
BALB/cJ MGP_BALBcJ_G0031810
 protein coding gene Chr7:22355855-22361825 (+)
C3H/HeJ MGP_C3HHeJ_G0031530
 protein coding gene Chr7:23053176-23059246 (+)
C57BL/6NJ MGP_C57BL6NJ_G0032273
 protein coding gene Chr7:23411380-23417190 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0029331
 protein coding gene Chr7:23621627-23627366 (+)
CAST/EiJ MGP_CASTEiJ_G0030871
 protein coding gene Chr7:16515874-16521964 (+)
CBA/J MGP_CBAJ_G0031495
 protein coding gene Chr7:24289398-24298267 (+)
DBA/2J MGP_DBA2J_G0031649
 protein coding gene Chr7:22064658-22070570 (+)
FVB/NJ MGP_FVBNJ_G0031602
 protein coding gene Chr7:22019173-22025151 (+)
LP/J MGP_LPJ_G0031728
 protein coding gene Chr7:23015512-23022064 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0031639
 protein coding gene Chr7:24070728-24077037 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0032305
 protein coding gene Chr7:22356312-22362119 (+)
PWK/PhJ MGP_PWKPhJ_G0030595
 protein coding gene Chr7:16947397-16954152 (+)
SPRET/EiJ MGP_SPRETEiJ_G0030425
 protein coding gene Chr7:13692749-13698687 (+)
WSB/EiJ MGP_WSBEiJ_G0030974
 protein coding gene Chr7:22481614-22488723 (+)



Homology
more
  • Human Ortholog
    LYPD5, LY6/PLAUR domain containing 5
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LYPD5, LY6/PLAUR domain containing 5
  • Synonyms
    HALDISIN, PRO4356
  • Links
    NCBI Gene ID: 284348
    neXtProt AC: NX_Q6UWN5
    UniProt: Q6UWN5

  • Chr Location
    19q13.31; chr19:43785874-43827206 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    19
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 76942 NCBI Gene Model | MGI Sequence Detail 5052 C57BL/6J ±  kb
transcript NM_029806 RefSeq | MGI Sequence Detail 1377 C57BL/6  
polypeptide Q9D7Z7 UniProt | EBI | MGI Sequence Detail 256 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 19
    cDNA 19

    Microarray probesets 3
Other
Accession IDs
less
MGI:1916860
References
more
  • Summaries
    All 28
    Gene Ontology 3
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/29/2024
MGI 6.24 		The Jackson Laboratory