Krtap13-21 MGI Mouse Gene Detail - MGI:1916946 - keratin associated protein 13-21

Symbol

Krtap13-21
Name

keratin associated protein 13-21
Synonyms

2310057N15Rik

Feature Type

protein coding gene
IDs

MGI:1916946
NCBI Gene: 69696
Alliance

gene page
Transcription Start Sites

1 TSS

Sequence Map

Chr16:88570069-88571094 bp, - strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 16, 51.40 cM, cytoband C3.3
Mapping Data

2 experiments

SNPs within 2kb

168 from dbSNP Build 142
Strain Annotations

16

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916946	protein coding gene	Chr16:88570067-88571094 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0022993	protein coding gene	Chr16:89595004-89596128 (-)
A/J	MGP_AJ_G0022961	protein coding gene	Chr16:85435049-85436076 (-)
AKR/J	MGP_AKRJ_G0022931	protein coding gene	Chr16:88040993-88042018 (-)
BALB/cJ	MGP_BALBcJ_G0022963	protein coding gene	Chr16:85968024-85968824 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0023410	protein coding gene	Chr16:92473255-92474209 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0020914	protein coding gene	Chr16:83264839-83265816 (-)
CAST/EiJ	MGP_CASTEiJ_G0022246	protein coding gene	Chr16:89037557-89038539 (-)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0022827	protein coding gene	Chr16:85369213-85370111 (-)
FVB/NJ	MGP_FVBNJ_G0022802	protein coding gene	Chr16:84461348-84462388 (-)
LP/J	MGP_LPJ_G0022897	protein coding gene	Chr16:89274817-89275991 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0022822	protein coding gene	Chr16:100984040-100984892 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0023428	protein coding gene	Chr16:88534224-88535124 (-)
PWK/PhJ	MGP_PWKPhJ_G0021990	protein coding gene	Chr16:85526572-85528197 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0021820	protein coding gene	Chr16:88091773-88092772 (-)
WSB/EiJ	MGP_WSBEiJ_G0022295	protein coding gene	Chr16:88768855-88769719 (-)

Human Ortholog

KRTAP13-2, keratin associated protein 13-2

Vertebrate Orthologs

6

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

KRTAP13-2, keratin associated protein 13-2
Synonyms

KAP13-2
Links

HGNC:18923

NCBI Gene ID: 337959

neXtProt AC: NX_Q52LG2

UniProt: Q52LG2
Chr Location

21q22.11; chr21:30371390-30372271 (-) GRCh38

Human Ortholog

KRTAP13-3, keratin associated protein 13-3
Synonyms

KAP13.3
Links

HGNC:18925

NCBI Gene ID: 337960

neXtProt AC: NX_Q3SY46

UniProt: Q3SY46
Chr Location

21q22.11; chr21:30425380-30425926 (-) GRCh38

Human Ortholog

KRTAP13-4, keratin associated protein 13-4
Synonyms

KAP13.4
Links

HGNC:18926

NCBI Gene ID: 284827

neXtProt AC: NX_Q3LI77

UniProt: Q3LI77
Chr Location

21q22.11; chr21:30430220-30431026 (+) GRCh38

MGI Vertebrate Homology

Krtap13-21 stringent orthology
3 human;1 mouse;3 rat
HCOP

vertebrate homology predictions: KRTAP13-2, KRTAP13-3, KRTAP13-4
Gene Tree

Krtap13-21

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Phenotype Summary

6 phenotype references

All Mutations and Alleles

3
Targeted

2
Genomic Mutations

3 involving Krtap13-21
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

6 strains or lines available

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

718
Tissues

5
cDNA Data

3
Literature Summary

2

Images

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

27
RefSeq

2
UniProt

2
CCDS

CCDS28302.1

Ensembl

ENSMUSG00000048830 (Evidence)
NCBI Gene

69696

			Length	Strain/Species	Flank
genomic	69696	NCBI Gene Model \| MGI Sequence Detail	1026	C57BL/6J	± kb
transcript	NM_027170	RefSeq \| MGI Sequence Detail	1026	C57BL/6
polypeptide	NP_081446	RefSeq \| MGI Sequence Detail	200	C57BL/6

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UniProt

2 Sequences
InterPro Domains

IPR007951 Keratin-associated protein, PMG type

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All nucleic 4

cDNA 3

Primer pair 1

Microarray probesets 2

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MGI:7593848

Summaries

All 21

Developmental Gene Expression 2

Phenotypes 6
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:335294 Redhead Y, et al., Craniofacial dysmorphology in Down syndrome is caused by increased dosage of Dyrk1a and at least three other genes. Development. 2023 Apr 15;150(8):dev201077

TSS for Krtap13-21:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr141969	Chr16:88571089-88571094 (-)	2 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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