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Ptrhd1 Gene Detail
Summary
  • Symbol
    Ptrhd1
  • Name
    peptidyl-tRNA hydrolase domain containing 1
  • Synonyms
    2410017P09Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916959
    NCBI Gene: 69709
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:4284027-4289950 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 2.04 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    241 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916959
 protein coding gene Chr12:4284013-4290123 (+)
129S1/SvImJ MGP_129S1SvImJ_G0019566
 protein coding gene Chr12:1104434-1111552 (+)
A/J MGP_AJ_G0019533
 protein coding gene Chr12:1117765-1124359 (+)
AKR/J MGP_AKRJ_G0019503
 protein coding gene Chr12:1277164-1283248 (+)
BALB/cJ MGP_BALBcJ_G0019508
 protein coding gene Chr12:1134737-1140779 (+)
C3H/HeJ MGP_C3HHeJ_G0019314
 protein coding gene Chr12:1061219-1067686 (+)
C57BL/6NJ MGP_C57BL6NJ_G0019957
 protein coding gene Chr12:1131405-1137471 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0017582
 protein coding gene Chr12:1019302-1026083 (+)
CAST/EiJ MGP_CASTEiJ_G0018869
 protein coding gene Chr12:1128418-1133460 (+)
CBA/J MGP_CBAJ_G0019285
 protein coding gene Chr12:1399847-1406848 (+)
DBA/2J MGP_DBA2J_G0019398
 protein coding gene Chr12:1053469-1059588 (+)
FVB/NJ MGP_FVBNJ_G0019388
 protein coding gene Chr12:1075905-1082768 (+)
LP/J MGP_LPJ_G0019469
 protein coding gene Chr12:1118497-1125499 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0019422
 protein coding gene Chr12:1185282-1191950 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0019996
 protein coding gene Chr12:1059862-1065955 (+)
PWK/PhJ MGP_PWKPhJ_G0018635
 protein coding gene Chr12:1081171-1087496 (+)
SPRET/EiJ MGP_SPRETEiJ_G0018426
 protein coding gene Chr12:1121298-1129903 (+)
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    PTRHD1, peptidyl-tRNA hydrolase domain containing 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PTRHD1, peptidyl-tRNA hydrolase domain containing 1
  • Synonyms
    C2orf79, NEDPBA
  • Links
    NCBI Gene ID: 391356
    neXtProt AC: NX_Q6GMV3
    UniProt: Q6GMV3

  • Chr Location
    2p23.3; chr2:24789728-24793391 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    36
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000096199 Ensembl Gene Model | MGI Sequence Detail 5924 C57BL/6J ±  kb
transcript ENSMUST00000179139 Ensembl | MGI Sequence Detail 3840 Not Applicable  
polypeptide ENSMUSP00000137070 Ensembl | MGI Sequence Detail 140 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 36
    cDNA 36

    Microarray probesets 4
References
more
  • Summaries
    All 26
    Gene Ontology 2
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory