2010007H06Rik Gene Detail

Summary

• Symbol
  2010007H06Rik
• Name
  RIKEN cDNA 2010007H06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1917099
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:51189813-51195510 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 28.04 cM, cytoband B
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  162 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917099	lncRNA gene	Chr9:51189813-51195510 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004626	antisense lncRNA gene	Chr9:50202170-50207879 (+)
A/J	MGP_AJ_G0004607	antisense lncRNA gene	Chr9:48675428-48681126 (+)
AKR/J	MGP_AKRJ_G0004590	antisense lncRNA gene	Chr9:49690335-49696032 (+)
BALB/cJ	MGP_BALBcJ_G0004591	antisense lncRNA gene	Chr9:48425666-48431361 (+)
C3H/HeJ	MGP_C3HHeJ_G0004540	antisense lncRNA gene	Chr9:50183495-50189186 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004741	antisense lncRNA gene	Chr9:51610264-51615960 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004192	antisense lncRNA gene	Chr9:48136747-48142617 (+)
CAST/EiJ	MGP_CASTEiJ_G0004498	antisense lncRNA gene	Chr9:50124586-50130278 (+)
CBA/J	MGP_CBAJ_G0004534	antisense lncRNA gene	Chr9:53427083-53432771 (+)
DBA/2J	MGP_DBA2J_G0004549	antisense lncRNA gene	Chr9:48532248-48537980 (+)
FVB/NJ	MGP_FVBNJ_G0004567	antisense lncRNA gene	Chr9:47748847-47754909 (+)
LP/J	MGP_LPJ_G0004630	antisense lncRNA gene	Chr9:50568743-50574452 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004555	antisense lncRNA gene	Chr9:55004126-55011346 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004740	antisense lncRNA gene	Chr9:49685867-49691562 (+)
PWK/PhJ	MGP_PWKPhJ_G0004451	antisense lncRNA gene	Chr9:48514059-48519795 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004391	antisense lncRNA gene	Chr9:49977307-49982990 (+)
WSB/EiJ	MGP_WSBEiJ_G0004539	antisense lncRNA gene	Chr9:49688495-49694189 (+)

Homology

• Gene Tree
  2010007H06Rik
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• UniProt
  1

• Ensembl
  ENSMUSG00000044694 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000044694	Ensembl Gene Model | MGI Sequence Detail	5698	C57BL/6J
transcript	ENSMUST00000186025	Ensembl | MGI Sequence Detail	4934	Not Applicable
polypeptide	Q9CVI0	UniProt | EBI | MGI Sequence Detail	119	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

References

• Summaries
  All 10
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573