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Nup43 Gene Detail
Summary
  • Symbol
    Nup43
  • Name
    nucleoporin 43
  • Synonyms
    2610016K01Rik, 2610529I12Rik, 43kDa, p42
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917162
    NCBI Gene: 69912
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:7543267-7554645 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 2.28 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    373 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917162
 protein coding gene Chr10:7543267-7554650 (+)
129S1/SvImJ MGP_129S1SvImJ_G0016996
 protein coding gene Chr10:4888376-4899688 (+)
A/J MGP_AJ_G0016974
 protein coding gene Chr10:4644855-4656373 (+)
AKR/J MGP_AKRJ_G0016938
 protein coding gene Chr10:4730517-4745399 (+)
BALB/cJ MGP_BALBcJ_G0016932
 protein coding gene Chr10:4617313-4629909 (+)
C3H/HeJ MGP_C3HHeJ_G0016757
 protein coding gene Chr10:4856278-4878400 (+)
C57BL/6NJ MGP_C57BL6NJ_G0017394
 protein coding gene Chr10:4993986-5009286 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0015099
 protein coding gene Chr10:4235972-4247858 (+)
CAST/EiJ MGP_CASTEiJ_G0016339
 protein coding gene Chr10:4771759-4784940 (+)
CBA/J MGP_CBAJ_G0016729
 protein coding gene Chr10:5148568-5159598 (+)
DBA/2J MGP_DBA2J_G0016837
 protein coding gene Chr10:4576688-4587677 (+)
FVB/NJ MGP_FVBNJ_G0016832
 protein coding gene Chr10:4523808-4534704 (+)
LP/J MGP_LPJ_G0016912
 protein coding gene Chr10:4729824-4743421 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016862
 protein coding gene Chr10:5113696-5127954 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0017432
 protein coding gene Chr10:4679959-4698133 (+)
PWK/PhJ MGP_PWKPhJ_G0016124
 protein coding gene Chr10:4547128-4558330 (+)
SPRET/EiJ MGP_SPRETEiJ_G0015906
 protein coding gene Chr10:4763096-4778490 (+)
WSB/EiJ MGP_WSBEiJ_G0016401
 protein coding gene Chr10:4683996-4698375 (+)



Homology
more
  • Human Ortholog
    NUP43, nucleoporin 43
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    NUP43, nucleoporin 43
  • Synonyms
    bA350J20.1, p42
  • Links
    NCBI Gene ID: 348995
    neXtProt AC: NX_Q8NFH3
    UniProt: Q8NFH3

  • Chr Location
    6q25.1; chr6:149724315-149749665 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    19
  • GO References
    7
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    805
  • Tissues
    14
  • cDNA Data
    54
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000040034 Ensembl Gene Model | MGI Sequence Detail 11379 C57BL/6J ±  kb
transcript ENSMUST00000040135 Ensembl | MGI Sequence Detail 1286 Not Applicable  
polypeptide ENSMUSP00000046732 Ensembl | MGI Sequence Detail 380 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 54
    cDNA 54

    Microarray probesets 4
Other
Accession IDs
less
MGI:1919059, MGI:2143473
References
more
  • Summaries
    All 34
    Developmental Gene Expression 1
    Gene Ontology 7
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory