5730405O15Rik Gene Detail

Summary

• Symbol
  5730405O15Rik
• Name
  RIKEN cDNA 5730405O15 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1917739
  NCBI Gene: 70489
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  ChrX:12908254-12911534 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 7.92 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  114 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917739	lncRNA gene	ChrX:12907989-12911536 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015773	unclassified non-coding RNA gene	ChrX:7891206-7894487 (+)
A/J	MGP_AJ_G0015750	unclassified non-coding RNA gene	ChrX:7979664-7982945 (+)
AKR/J	MGP_AKRJ_G0015712	unclassified non-coding RNA gene	ChrX:8248846-8252127 (+)
BALB/cJ	MGP_BALBcJ_G0015711	unclassified non-coding RNA gene	ChrX:7826551-7829832 (+)
C3H/HeJ	MGP_C3HHeJ_G0015531	unclassified non-coding RNA gene	ChrX:7982130-7985402 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016165	unclassified non-coding RNA gene	ChrX:8086519-8089825 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013889	unclassified non-coding RNA gene	ChrX:6899855-6903265 (+)
CAST/EiJ	MGP_CASTEiJ_G0015086	unclassified non-coding RNA gene	ChrX:7742846-7746103 (+)
CBA/J	MGP_CBAJ_G0015511	unclassified non-coding RNA gene	ChrX:8505417-8508698 (+)
DBA/2J	MGP_DBA2J_G0015609	unclassified non-coding RNA gene	ChrX:7812805-7816287 (+)
FVB/NJ	MGP_FVBNJ_G0015615	unclassified non-coding RNA gene	ChrX:7651636-7654917 (+)
LP/J	MGP_LPJ_G0015691	unclassified non-coding RNA gene	ChrX:8072332-8075607 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015638	unclassified non-coding RNA gene	ChrX:8404609-8407887 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016209	unclassified non-coding RNA gene	ChrX:7810597-7814413 (+)
PWK/PhJ	MGP_PWKPhJ_G0014868	unclassified non-coding RNA gene	ChrX:7326680-7330046 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014655	unclassified non-coding RNA gene	ChrX:7922821-7926913 (+)
WSB/EiJ	MGP_WSBEiJ_G0015190	unclassified non-coding RNA gene	ChrX:7872627-7875905 (+)

Homology

• Gene Tree
  5730405O15Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  49
• Gene trapped
  49
• Find Mice (IMSR)
  52 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000087424 (Evidence)
• NCBI Gene
  70489

Representative Sequences			Length	Strain/Species
genomic	70489	NCBI Gene Model | MGI Sequence Detail	3281	C57BL/6J
transcript	NR_038158	RefSeq | MGI Sequence Detail	887	C57BL/6

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 1

References

• Summaries
  All 15

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 5730405O15Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr160575	ChrX:12908038-12908075 (+)	-197 bp
Tssr160576	ChrX:12908077-12908091 (+)	-170 bp
Tssr160577	ChrX:12908244-12908290 (+)	13 bp