5730412P04Rik Gene Detail

Summary

• Symbol
  5730412P04Rik
• Name
  RIKEN cDNA 5730412P04 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1917741
  NCBI Gene: 70491
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:135005352-135016169 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 57.39 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  114 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917741	lncRNA gene	ChrX:135005352-135016169 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015793	unclassified non-coding RNA gene	ChrX:133473068-133484843 (+)
A/J	MGP_AJ_G0015768	unclassified non-coding RNA gene	ChrX:132869070-132879887 (+)
AKR/J	MGP_AKRJ_G0015733	unclassified non-coding RNA gene	ChrX:137128503-137140239 (+)
BALB/cJ	MGP_BALBcJ_G0015731	unclassified non-coding RNA gene	ChrX:131255792-131266609 (+)
C3H/HeJ	MGP_C3HHeJ_G0015550	unclassified non-coding RNA gene	ChrX:133454908-133465721 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016186	unclassified non-coding RNA gene	ChrX:137294300-137305987 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013907	unclassified non-coding RNA gene	ChrX:124864162-124875222 (+)
CAST/EiJ	MGP_CASTEiJ_G0015109	unclassified non-coding RNA gene	ChrX:114381308-114392061 (+)
CBA/J	MGP_CBAJ_G0015530	unclassified non-coding RNA gene	ChrX:141527789-141540686 (+)
DBA/2J	MGP_DBA2J_G0015628	unclassified non-coding RNA gene	ChrX:132207721-132218430 (+)
FVB/NJ	MGP_FVBNJ_G0015633	unclassified non-coding RNA gene	ChrX:131378835-131384991 (+)
LP/J	MGP_LPJ_G0015711	unclassified non-coding RNA gene	ChrX:134389822-134400894 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015658	unclassified non-coding RNA gene	ChrX:148915373-148926766 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016231	unclassified non-coding RNA gene	ChrX:132818943-132830046 (+)
PWK/PhJ	MGP_PWKPhJ_G0014888	unclassified non-coding RNA gene	ChrX:111290640-111302114 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014674	unclassified non-coding RNA gene	ChrX:115026130-115037139 (+)
WSB/EiJ	MGP_WSBEiJ_G0015209	unclassified non-coding RNA gene	ChrX:131152672-131165130 (+)

Homology

• Gene Tree
  5730412P04Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000087553 (Evidence)
• NCBI Gene
  70491

Representative Sequences			Length	Strain/Species
genomic	70491	NCBI Gene Model | MGI Sequence Detail	10818	C57BL/6J
transcript	NR_045424	RefSeq | MGI Sequence Detail	1264	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 9

  Developmental Gene Expression 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:199138 Zhou J, et al., A 1.1-Mb segmental deletion on the X chromosome causes meiotic failure in male mice. Biol Reprod. 2013 Jun;88(6):159