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5730416F02Rik Pseudogene Detail
Summary
  • Symbol
    5730416F02Rik
  • Name
    RIKEN cDNA 5730416F02 gene
  • Feature Type
    pseudogene
  • IDs
    MGI:1917800
    NCBI Gene: 70550
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    ChrX:108045091-108045902 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 47.92 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    101 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917800
 pseudogene ChrX:108045091-108045902 (+)
129S1/SvImJ MGP_129S1SvImJ_G0014726
 pseudogene ChrX:105850617-105851428 (+)
A/J MGP_AJ_G0014729
 pseudogene ChrX:105708953-105709764 (+)
AKR/J MGP_AKRJ_G0014662
 pseudogene ChrX:109001219-109002030 (+)
BALB/cJ MGP_BALBcJ_G0014681
 pseudogene ChrX:104394357-104395168 (+)
C3H/HeJ MGP_C3HHeJ_G0014513
 pseudogene ChrX:106302451-106303262 (+)
C57BL/6NJ MGP_C57BL6NJ_G0015166
 pseudogene ChrX:108898850-108899661 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0012835
 pseudogene ChrX:102775016-102775839 (+)
CAST/EiJ MGP_CASTEiJ_G0014132
 pseudogene ChrX:90345086-90345897 (+)
CBA/J MGP_CBAJ_G0014505
 pseudogene ChrX:112313714-112314525 (+)
DBA/2J MGP_DBA2J_G0014588
 pseudogene ChrX:104870614-104871425 (+)
FVB/NJ MGP_FVBNJ_G0014567
 pseudogene ChrX:104260778-104261589 (+)
LP/J MGP_LPJ_G0014682
 pseudogene ChrX:106858898-106859709 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0014616
 pseudogene ChrX:117325993-117326804 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0015135
 pseudogene ChrX:105401716-105402527 (+)
PWK/PhJ MGP_PWKPhJ_G0013936
 pseudogene ChrX:87878995-87879806 (+)
SPRET/EiJ MGP_SPRETEiJ_G0013733
 pseudogene ChrX:91188708-91189489 (+)
WSB/EiJ MGP_WSBEiJ_G0014213
 pseudogene ChrX:104142557-104143368 (+)



Homology
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    25
  • RefSeq
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 70550 NCBI Gene Model | MGI Sequence Detail 812 C57BL/6J ±  kb
transcript NR_033596 RefSeq | MGI Sequence Detail 812 Not Specified  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 3
References
more
  • Summaries
    All 11
    Gene Ontology 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:223994 Zangrando J, et al., Identification of candidate long non-coding RNAs in response to myocardial infarction. BMC Genomics. 2014;15:460
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory