5730488B01Rik Gene Detail

Summary

• Symbol
  5730488B01Rik
• Name
  RIKEN cDNA 5730488B01 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1917852
  NCBI Gene: 70602
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:44702800-44705110 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  98 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917852	lncRNA gene	Chr4:44702800-44705110 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0001354	unclassified gene	Chr4:42888501-42890811 (+)
A/J	MGP_AJ_G0001335	unclassified gene	Chr4:41362665-41364975 (+)
AKR/J	MGP_AKRJ_G0001321	unclassified gene	Chr4:42332199-42334510 (+)
BALB/cJ	MGP_BALBcJ_G0001330	unclassified gene	Chr4:41447602-41449912 (+)
C3H/HeJ	MGP_C3HHeJ_G0001308	unclassified gene	Chr4:42946606-42948916 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0001447	unclassified gene	Chr4:44517722-44520032 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001149	unclassified gene	Chr4:38771074-38773374 (+)
CAST/EiJ	MGP_CASTEiJ_G0001289	unclassified gene	Chr4:42471395-42473704 (+)
CBA/J	MGP_CBAJ_G0001299	unclassified gene	Chr4:45885007-45887317 (+)
DBA/2J	MGP_DBA2J_G0001306	unclassified gene	Chr4:41260355-41262665 (+)
FVB/NJ	MGP_FVBNJ_G0001315	unclassified gene	Chr4:40487029-40489339 (+)
LP/J	MGP_LPJ_G0001360	unclassified gene	Chr4:42954241-42956551 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0001301	unclassified gene	Chr4:49053647-49055958 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001436	unclassified gene	Chr4:42549294-42551604 (+)
PWK/PhJ	MGP_PWKPhJ_G0001243	unclassified gene	Chr4:41311884-41314194 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0001219	unclassified gene	Chr4:42074587-42076897 (+)
WSB/EiJ	MGP_WSBEiJ_G0001304	unclassified gene	Chr4:42425757-42428067 (+)

Homology

• Gene Tree
  5730488B01Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000103995 (Evidence)
• NCBI Gene
  70602

Representative Sequences			Length	Strain/Species
genomic	70602	NCBI Gene Model | MGI Sequence Detail	2311	C57BL/6J
transcript	NR_073462	RefSeq | MGI Sequence Detail	2311	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

References

• Summaries
  All 9
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 5730488B01Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37030	Chr4:44701600-44701642 (+)	-1,179 bp