Spmip4 MGI Mouse Gene Detail - MGI:1918071 - sperm microtubule inner protein 4

Symbol

Spmip4
Name

sperm microtubule inner protein 4
Synonyms

4921507P07Rik

Feature Type

protein coding gene
IDs

MGI:1918071
NCBI Gene: 70821
Alliance

gene page
Transcription Start Sites

4 TSS

Sequence Map

Chr6:50550282-50573612 bp, - strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 6, 24.32 cM, cytoband B3
Mapping Data

2 experiments

SNPs within 2kb

576 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918071	protein coding gene	Chr6:50550282-50573847 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0030731	protein coding gene	Chr6:49695399-49718737 (-)
A/J	MGP_AJ_G0030701	protein coding gene	Chr6:47374280-47397611 (-)
AKR/J	MGP_AKRJ_G0030627	protein coding gene	Chr6:49039609-49062923 (-)
BALB/cJ	MGP_BALBcJ_G0030712	protein coding gene	Chr6:47720327-47743664 (-)
C3H/HeJ	MGP_C3HHeJ_G0030426	protein coding gene	Chr6:49062899-49086321 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0031167	protein coding gene	Chr6:50807993-50831305 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0028374	protein coding gene	Chr6:44981476-45002501 (-)
CAST/EiJ	MGP_CASTEiJ_G0029828	protein coding gene	Chr6:48783162-48807134 (-)
CBA/J	MGP_CBAJ_G0030399	protein coding gene	Chr6:52947286-52970619 (-)
DBA/2J	MGP_DBA2J_G0030549	protein coding gene	Chr6:47289298-47312919 (-)
FVB/NJ	MGP_FVBNJ_G0030501	protein coding gene	Chr6:46926530-46949863 (-)
LP/J	MGP_LPJ_G0030634	protein coding gene	Chr6:49651209-49674539 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0030535	protein coding gene	Chr6:55660417-55683744 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0031197	protein coding gene	Chr6:48958674-48981944 (-)
PWK/PhJ	MGP_PWKPhJ_G0029541	protein coding gene	Chr6:46864995-46888500 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0029376	protein coding gene	Chr6:48278598-48308266 (-)
WSB/EiJ	MGP_WSBEiJ_G0029905	protein coding gene	Chr6:48926059-48949368 (-)

Human Ortholog

SPMIP4, sperm microtubule inner protein 4

Vertebrate Orthologs

2

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

SPMIP4, sperm microtubule inner protein 4
Synonyms

C7orf31
Links

HGNC:21722

NCBI Gene ID: 136895

neXtProt AC: NX_Q8N865

UniProt: Q8N865
Chr Location

7p15.3; chr7:25125772-25180356 (-) GRCh38

MGI Vertebrate Homology

Spmip4 stringent orthology
1 human;1 mouse;1 rat
HCOP

vertebrate homology predictions: SPMIP4
Gene Tree

Spmip4

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Phenotype Summary

1 phenotype from 1 allele in 1 genetic background
1 phenotype reference

All Mutations and Alleles

1
Endonuclease-mediated

1
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

23 strains or lines available

Mice exhibit normal male fertility.

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All GO Annotations

5
GO References

4

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

14

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

40
RefSeq

10
UniProt

2
CCDS

CCDS20132.1

Ensembl

ENSMUSG00000029828 (Evidence)
NCBI Gene

70821

			Length	Strain/Species	Flank
genomic	ENSMUSG00000029828	Ensembl Gene Model \| MGI Sequence Detail	23331	C57BL/6J	± kb
transcript	ENSMUST00000031852	Ensembl \| MGI Sequence Detail	2378	Not Applicable
polypeptide	ENSMUSP00000031852	Ensembl \| MGI Sequence Detail	588	Not Applicable

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UniProt

2 Sequences
Protein Ontology

PR:000059942 sperm-associated microtubule inner protein 4

(term hierarchy)
InterPro Domains

IPR027886 Sperm-associated microtubule inner protein 4

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All nucleic 14

cDNA 14

Microarray probesets 3

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MGI:7470725

Summaries

All 24

Gene Ontology 4

Phenotypes 1
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:293870 Sun J, et al., CRISPR/Cas9-based genome editing in mice uncovers 13 testis- or epididymis-enriched genes individually dispensable for male reproduction. Biol Reprod. 2020 Aug 4;103(2):183-194

TSS for Spmip4:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr60923	Chr6:50573604-50573619 (-)	0 bp
Tssr60922	Chr6:50573558-50573592 (-)	37 bp
Tssr60921	Chr6:50573544-50573553 (-)	63 bp
Tssr60920	Chr6:50551396-50551409 (-)	22,209 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 12/10/2024 MGI 6.24