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Fam47c Gene Detail
Summary
  • Symbol
    Fam47c
  • Name
    family with sequence similarity 47, member C
  • Synonyms
    4921509A18Rik, Fam47a-ps
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918114
    NCBI Gene: 70864
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:77781369-77783007 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 38.35 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    140 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918114
 protein coding gene ChrX:77781369-77783016 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035880
 protein coding gene ChrX:74603281-74604919 (+)
A/J MGP_AJ_G0035866
 protein coding gene ChrX:74869529-74871167 (+)
AKR/J MGP_AKRJ_G0035784
 protein coding gene ChrX:76826363-76828001 (+)
BALB/cJ MGP_BALBcJ_G0035846
 protein coding gene ChrX:73796705-73798343 (+)
C3H/HeJ MGP_C3HHeJ_G0035557
 protein coding gene ChrX:75026238-75027876 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036378
 protein coding gene ChrX:76910564-76912202 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033208
 protein coding gene ChrX:74263060-74264696 (+)
CAST/EiJ MGP_CASTEiJ_G0034845
 protein coding gene ChrX:60278901-60280534 (+)
CBA/J MGP_CBAJ_G0035531
 protein coding gene ChrX:78986108-78987746 (+)
DBA/2J MGP_DBA2J_G0035687
 protein coding gene ChrX:74310025-74311663 (+)
FVB/NJ MGP_FVBNJ_G0035626
 protein coding gene ChrX:73537786-73539362 (+)
LP/J MGP_LPJ_G0035775
 protein coding gene ChrX:75438836-75440474 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035663
 protein coding gene ChrX:81813456-81815085 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036404
 protein coding gene ChrX:74417572-74419210 (+)
PWK/PhJ MGP_PWKPhJ_G0034543
 protein coding gene ChrX:58358339-58359977 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034374
 protein coding gene ChrX:61179918-61181556 (-)
WSB/EiJ MGP_WSBEiJ_G0034984
 protein coding gene ChrX:73607125-73608763 (+)



Homology
more
  • Human Ortholog
    FAM47A, family with sequence similarity 47 member A
  • Vertebrate Orthologs
    6
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    FAM47A, family with sequence similarity 47 member A
  • Links
    NCBI Gene ID: 158724
    neXtProt AC: NX_Q5JRC9
    UniProt: Q5JRC9

  • Chr Location
    Xp21.1; chrX:34129752-34132314 (-)  GRCh38
  • Human Ortholog
    FAM47B, family with sequence similarity 47 member B
  • Links
    NCBI Gene ID: 170062
    neXtProt AC: NX_Q8NA70
    UniProt: Q8NA70

  • Chr Location
    Xp21.1; chrX:34942796-34944915 (+)  GRCh38
  • Human Ortholog
    FAM47C, family with sequence similarity 47 member C
  • Links
    NCBI Gene ID: 442444
    neXtProt AC: NX_Q5HY64
    UniProt: Q5HY64

  • Chr Location
    Xp21.1; chrX:37008366-37011664 (+)  GRCh38
  • Human Ortholog
    FAM47DP, family with sequence similarity 47 member D, pseudogene
  • Links
    NCBI Gene ID: 139249
    UniProt: A6NHR8

  • Chr Location
    Xp21.1; chrX:37540931-37545262 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    4
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000078315 Ensembl Gene Model | MGI Sequence Detail 1639 C57BL/6J ±  kb
transcript ENSMUST00000105110 Ensembl | MGI Sequence Detail 1639 Not Applicable  
polypeptide ENSMUSP00000137737 Ensembl | MGI Sequence Detail 430 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR032743 FAM47 family
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 2
References
more
  • Summaries
    All 17
    Gene Ontology 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory