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Lpcat2b Gene Detail
Summary
  • Symbol
    Lpcat2b
  • Name
    lysophosphatidylcholine acyltransferase 2B
  • Synonyms
    4921521K07Rik, Aytl1b
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918152
    NCBI Gene: 70902
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:107579415-107582905 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 52.23 cM, cytoband E5
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    113 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918152
 protein coding gene Chr5:107579415-107582905 (+)
129S1/SvImJ MGP_129S1SvImJ_G0029837
 protein coding gene Chr5:109464159-109467649 (+)
A/J MGP_AJ_G0029801
 protein coding gene Chr5:105267709-105271199 (+)
AKR/J MGP_AKRJ_G0029746
 protein coding gene Chr5:108669569-108673059 (+)
BALB/cJ MGP_BALBcJ_G0029813
 protein coding gene Chr5:106401890-106405380 (+)
C3H/HeJ MGP_C3HHeJ_G0029535
 protein coding gene Chr5:109113995-109117486 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030267
 protein coding gene Chr5:113957324-113960814 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027501
 protein coding gene Chr5:100342738-100347062 (+)
CAST/EiJ MGP_CASTEiJ_G0028949
 protein coding gene Chr5:108053348-108056872 (+)
CBA/J MGP_CBAJ_G0029503
 protein coding gene Chr5:117784455-117787946 (+)
DBA/2J MGP_DBA2J_G0029649
 protein coding gene Chr5:105403459-105406950 (+)
FVB/NJ MGP_FVBNJ_G0029606
 protein coding gene Chr5:104136609-104140100 (+)
LP/J MGP_LPJ_G0029737
 protein coding gene Chr5:110050014-110053504 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029638
 protein coding gene Chr5:122706576-122710066 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030301
 protein coding gene Chr5:108228545-108232035 (+)
PWK/PhJ MGP_PWKPhJ_G0028662
 protein coding gene Chr5:104207849-104211340 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028500
 protein coding gene Chr5:105749916-105753409 (+)
WSB/EiJ MGP_WSBEiJ_G0029022
 protein coding gene Chr5:108524907-108528397 (+)



Homology
more
  • Human Ortholog
    LPCAT2BP, lysophosphatidylcholine acyltransferase 2b, pseudogene
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LPCAT2BP, lysophosphatidylcholine acyltransferase 2b, pseudogene
  • Links
    NCBI Gene ID: 100128094

  • Chr Location
    1p22.1; chr1:92066306-92067839 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    12 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    7
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    714
  • Tissues
    8
  • cDNA Data
    6
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 70902 NCBI Gene Model | MGI Sequence Detail 3491 C57BL/6J ±  kb
transcript NM_027599 RefSeq | MGI Sequence Detail 2782 C57BL/6  
polypeptide Q9D5U0 UniProt | EBI | MGI Sequence Detail 516 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 4
References
more
  • Summaries
    All 37
    Developmental Gene Expression 1
    Gene Ontology 5
    Phenotypes 12
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory