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Wdr20rt Gene Detail
Summary
  • Symbol
    Wdr20rt
  • Name
    WD repeat domain 20, retrogene
  • Synonyms
    4921538B03Rik, 4930427E19Rik, Wdr20b
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918198
    NCBI Gene: 70948
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:65272291-65275228 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 27.21 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    212 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918198
 protein coding gene Chr12:65272291-65280133 (+)
129S1/SvImJ MGP_129S1SvImJ_G0019782
 protein coding gene Chr12:64710664-64713601 (+)
A/J MGP_AJ_G0020076
 protein coding gene Chr12:108768124-108783522 (+)
AKR/J MGP_AKRJ_G0019716
 protein coding gene Chr12:64305168-64309301 (+)
BALB/cJ MGP_BALBcJ_G0019721
 protein coding gene Chr12:62768623-62774212 (+)
C3H/HeJ MGP_C3HHeJ_G0019526
 protein coding gene Chr12:64649035-64651581 (+)
C57BL/6NJ no annotation
CAROLI/EiJ MGP_CAROLIEiJ_G0018119
 protein coding gene Chr12:105223898-105238944 (+)
CAST/EiJ MGP_CASTEiJ_G0023739
 protein coding gene Chr18:67279736-67291272 (+)
CBA/J MGP_CBAJ_G0019495
 protein coding gene Chr12:69180254-69182747 (+)
DBA/2J MGP_DBA2J_G0019611
 protein coding gene Chr12:62251620-62256167 (+)
FVB/NJ MGP_FVBNJ_G0019599
 protein coding gene Chr12:61277828-61281351 (+)
LP/J MGP_LPJ_G0019683
 protein coding gene Chr12:64732024-64735415 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0019637
 protein coding gene Chr12:72051122-72054059 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0020207
 protein coding gene Chr12:63692003-63699754 (+)
PWK/PhJ MGP_PWKPhJ_G0019165
 protein coding gene Chr12:102887368-102903005 (+)
SPRET/EiJ MGP_SPRETEiJ_G0018638
 protein coding gene Chr12:58024528-58026237 (+)
WSB/EiJ MGP_WSBEiJ_G0019463
 protein coding gene Chr12:112314963-112334315 (+)



Homology
more
  • Human Ortholog
    WDR20, WD repeat domain 20
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    WDR20, WD repeat domain 20
  • Synonyms
    Bun107, DMR
  • Links
    NCBI Gene ID: 91833
    neXtProt AC: NX_Q8TBZ3
    UniProt: Q8TBZ3

  • Chr Location
    14q32.31; chr14:102139423-102224847 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    9
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 70948 NCBI Gene Model | MGI Sequence Detail 2938 C57BL/6J ±  kb
transcript NM_027614 RefSeq | MGI Sequence Detail 2228 C57BL/6  
polypeptide Q9D5R2 UniProt | EBI | MGI Sequence Detail 567 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9

    Microarray probesets 4
Other
Accession IDs
less
MGI:1921881
References
more
  • Summaries
    All 27
    Gene Ontology 2
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:137511 Lin Q, et al., Mutagenesis of diploid mammalian genes by gene entrapment. Nucleic Acids Res. 2006;34(20):e139
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory